Gene detail

Gene detail information of Glyur001492s00037918

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G02960.4	7.00E-63	RING/FYVE/PHD zinc finger superfamily protein
NR	KEH19720.1	3.33E-152	RING/FYVE/PHD zinc finger protein [Medicago truncatula]
Swissprot	tr\|F4JKK0\|SUD1_ARATH	3.00E-10	Probable E3 ubiquitin ligase SUD1
trEMBL	tr\|A0A072U1P4\|A0A072U1P4_MEDTR	1.00E-152	RING/FYVE/PHD zinc finger protein {ECO:0000313\|EMBL:KEH19720.1}

Sequence

Transcript Sequence

>Glyur001492s00037918.1
TCCCTATACATACGCNAAATTCCNTTTCTATCGCACATTCTCTCTCAACCTTCCCCTGTTTTTCGCTACCTATATCTCTTACAAATCACCCCCTTTTTCTTCGGTTAGTCTCAGATTCCCTTCTCATTTTCCCGGGATTCGCCGATTCACCTCGCGATCTCGGGATTTGTTTCTCGATTCCCATTCCCATTCCATTCCATCCCCCCCGCCCCCTCTCTCCCTTTTCTTTCTTCTATTTTTTTTCCTTTTTAATTTGAAATTTTTGTTTTAATTTCGGTTTGAATAAATTTAAAAAAAAAAAAAAAAGAAGGATCAATGAGCGATCATTTGGTAGTGTTTGTGGACCGATTGGCGCATCCCATGCCGGTTGAGCCTCTGGCCCAACACCCGGCCCAGCCAGCTCCGGAACCGTCGACGCCGGTCAATGAGTCTCCGGCGGGCCCATCAGGCTCTGCTCCAGCATCGGAGGATGATGACGTCGGCGACGGGGAGGAGGAGCCGCTGTTGCAGATGGCAGAGTGTCGCATTTGTCAAGAGGAGGACAGCATCAATAATATGGAGACGCCATGCGCCTGCAGCGGTAGTCTTAAGTATGCTCACAGAAAATGCATCCAACACTGGTGCAACGAGAAAGGAGACATAACTTGTGAGATATGCCATAAGTCCTATGAACCTGGTTATACTGCCCCACCACCCCGTTCACATCCTGAAGAAACTACCATTGATATAGGTGGAGGCTGGACAATCTCTGGGACGCCTTTGGACTTGCATGATCCTCGACTCTTGGCAATTGCAGAGGCAGAACGCCAGTTCTTGGAAGCCGAATATGATGGATACGCTGCTTCTAGTGCTAGTGGAGCTGCATTTTGCCGTTCAGCTGCTCTAATTTTAATGGCCCTTTTACTCTTGAGGCATGCACTATCTGTCACAGATGTTGATGGTGAAGATGACCCATCTACTTTTTTCTCTCTTTTCTTGCTTCGAGCTGCTGGGTTTCTTTTACCNTGCTATATCATGGCTTGGGCAATCACACTAGCAGCAACCCAAGTTGCCTTTGTTCTACAATCGGGGCAGCGTAGGGGTCTGCAGTTTGCAATAGCACCAGGACCAACCGTGAACCCACACCAGGAACAAGTGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01492	34375	37978	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001492s00037918.1	PF12906.2	RINGv	69	114	5.30E-13
Glyur001492s00037918.1	PF12428.3	DUF3675	120	239	5.20E-46

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.981
SRR1783600	control	14.861
SRR1783602	moderate drought stress	4.296
SRR1811619	moderate drought stress	4.665

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.916
DRR006520	Root Summer glycyrrhizin high producing strain	8.748
DRR006521	Root Winter glycyrrhizin high producing strain	2.361
DRR006522	Root Winter glycyrrhizin high producing strain	2.128
DRR006523	Root Summer glycyrrhizin low producing strain	14.586
DRR006524	Root Summer glycyrrhizin low producing strain	13.814
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.726
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.881

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.911
SRR2868004	Drought Stress (root)	2.731
SRR2967015	Control (root)	1.834

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	38.971
SRR9715740	Leaf	19.773
SRR9715741	Leaf	41.570
SRR9715739	Root	9.266
SRR9715742	Root	13.595
SRR9715743	Root	12.961

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	37.679
SRR8749028	MeJA induced 9h	22.183
SRR8749029	MeJA induced 9h	35.163
SRR8749030	Uninduced	43.980
SRR8749031	Uninduced	49.928
SRR8749032	Uninduced	33.406

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.001
SRR8400027	Control - Root	9.411