Gene detail

Gene detail information of Glyur001490s00024456

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G27220.1	9.00E-20	Frigida-like protein
NR	XP_006592009.1	0	PREDICTED: flagellar attachment zone protein 1-like isoform X2 [Glycine max]
COG	YP_002771216.1	3.00E-13	hypothetical protein BBR47_17350 [Brevibacillus brevis NBRC 100599]
Swissprot	tr\|Q9LUV4\|FRL4A_ARATH	8.00E-12	FRIGIDA-like protein 4a
trEMBL	tr\|K7LSG1\|K7LSG1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G01835.1}

Sequence

Transcript Sequence

>Glyur001490s00024456.1
ATCCCACTGTGATAAAACCCAAAGAAAAGATTCCCCTTACTACTCAACTCACTTGCCGTCTTTCTCCAACCGCCTAAAACCGCAACCCAACACAACCCACGTAACCACGTTTCCACCCTTCTCATGGTTGCGAAAATCTATGGGCGGTAGTGGACCCGTCGTGGAACCAGAACTTGAGCGTTTCATTAAGGAAAACCAAAGCGACTACGACGCGCTTATGCAAGAATCGATTATGGAATCCTCCGCTGAATTCGACCTAAAGGAGCAAGAACTCTCGTTGCTCCGGAAATCGATCGATGAGTGCCGCGCAAAGAGAAAAACCGAAGAACAGCGACTCCACTCGCTGGAGCGACACATCGAGGAACGATCCAAAGCGCTCGAGTCGAAGGAGAAGCAACTCGGTTCCGTTCAGCGACAGTTGAACCTCTGCTGCAGAGACATCGACGCTAAGGAGAGGGAATACGGCGTCGTTCGGAGAACCGTTGAGGATCGCAACAGAGAGCTCGAGGCCAAAGGAGAGATTCTCAAGTCGATAGAGAAGAAGATCAGAGAATGCGAGAGGCTTTTGCTTGCGAAGGAGGAGGAATGTAACTGGCAACTGGAGGTGAATCACCGGTTGATCAGCGAGTGCGACGAGATTCACGAGAAGATGCAGAGAACGATGCAAGAATACGACACCGATCTTGTCGCCAAGGAGTCGCGGCTTAGTTTGATTGAGGGAATGATTATGGAGAGGGAGCAGGAGCTCAAAACGAAGGACGTGGAGTTCCACACCATTCGTAGGGAATGNGAGTGGAAGGAAGAGGAACTCGTCACGCTTTCGGCGAAGATTGTGGAGTTTAACAAGGAGATTAGGTCTAAAGAGGAAGACCTGGATGCAATGCAGAGGTTGGTTAATGGACAGGGGAAGGAACTGGAGTTTAAGAGGAAGAACTTGCTTCGGTCGATGCAGGAGAGGATTGATCAGCTTGCCCGGGAGCTTGAATCGAATAAGAAGGAGTCTGATTCCCTCAGGCGGTCGACGAAGGAGAGAGGCTTTGAGCTTGATAAGAAGGAGAAGCAGATTGGAGAGAGCGCGAAGGAGCTGGAGTCGCGGAAGAAGAAATTTGAAGGGCGGGTGAAGGAGTTTGAGTTGAAAGAGAGACGATTTGAGGGTCAAGTGAAGGAGCTCAAGTCAAAGGAGATGCACTTTGAGGGAAGAATGAAGGAGNTTGAATCAAAAGAGAAGCATTTTGAAGGACGAGCCAAGGAGCTCGAATCGAAAGAGAAGCAATTTGAAGGAACAGTGAAGGAGCTTGAATCGAAAGAGAAACGATTTGAAGGTCAAATGAAGGAGCTTGNAGCAAAAGAGAAGCGTTTTGAAGGCCAAGTGAAGGCACTCGAATCAGGACAGAAGCAGTTTGTAGTTCAAATGAAGGAGTTTGAGTCAGAAAAGAAGCAATTTGAAGGTCAAGTGAAGGAGCTTGAAGCAAAAGAGAAGCATTTTGAAGGCCAAGTGAAGGAACTCGAATCAGAACAGAAGCAATTTGTTGGGCGAGTGCAGGGGTTGGAGTCAAAAGAGAAGCATTTTGAAGGCCAGTTGAAGGAGCTTGAATCAAAACTGAAGCATTTTGAAGTTCAAATGAAGGAACTTGAATCAAAACAGAGGCAGTTTGTAGGGCGAGTGCAGGGATTCAAGTCAAAAGAGAAGCAATTTGAAGGTCAGGTGAAGGAGCTTGAATCAAAACAGAAGGATTTTGAAGTCGAACGGAAGGAACTCGAATCAAAACAGAAGCAATTTGCAGGACAAGTAAAGGAGCATGAGTCAAGAGAGAAGAACTTTGAAGCACGAATGAAGAAGCTCGGGTCTAACGAGAAGCAACATGAAGGACGGGCACGGGAGCTAGACTNAAAAGAGAAACAGTTTGAAGTACGAGTGAAGGAGCTTGACTCAAAAGAGAAGCAGTTTGAAGGACAAATGAAGGATTTTGAGTCCAAAAANAAGCAATATGAAGTACGAGTGAAGGTGCTTGAGTTAAAAGAAGCACAGTGTAAAGTGCAACTGAAGGAGATCAAGTCAAAAGATAGGCAGTTTGAAGAACAAATGAAGGATCTTGAGTCAAAGAAGAATCAGTATGAAAAACAAGTGAAGGAACTTGAGTTGAAAGAGGCACAGTTTAAACTGCAACTGAAAGAGCTCGAGTCAAACGAGAAGCAGTTTCAAGGACAGGTTGAGGATCTTCAGTCCAAGAAGAATCAACATGAAGAACAAGTGAAGGGGCTTGAGCTGAAAGAGGCACAGTTTAAACTGCAACTGAAGGAANTTGAGTCAAACGAGAAGCAGTTTGAAGGACGGGTGAAGGATCTTCAGTCCAAGAAGAATCAATATGAAGAACAAGTGAAGGAACTCGAGTTGAAAGAGGCACAGTTTAAACTGCAACTGAAGGAACTTGAGTCAAACGAGAAGCAGTTTGAAGAACGGGTGAAGGATCTTGAGACAAAACAGAATCAATTTGAAGGACAACTGAAGGAGCTTGAATTAGAAGAAAAGCAATATCAATCATTAAGAAAATCATTTGAAGANGAAAAAGTGTTGAAGGAGAAGTCCAATATCCTCCTTCATCAAGTAAAGACCGAGGAGCTGTATTTTACAGATGCCAACAGTGTAAACAATAGCAAGAATTTGGTATTGCTCTTCAACCTTCTGAAAAAATATGAGTTGATATGTAGTGAAGTCTCTGATGCTCTTCGAACATCAGCTGACCCTACTAAACTGGTGTTAGATACAATAAAAGGATTTTGTCCTCCTCAATCGGTGCAAGAACTTGTTGAACGTGATTCAAATATTTTAAGGAGAATATGTAATCTTTTGATGGATGAATTAANGCAATCTTCACCAGTAATTGGTTTTCATGTGAAAGAAGAGGCAATGAAATTGGCATGTGAATGGAAGGCGAATATAGCTGTAGCTGATGCTGATAAGGGTTATTTGGANGTCCTGGATTTTTTGAAGTTTGTTGCTACTTATGAGATTGGTTCATCTTTCAATGAAAATGAACTTCAGAGGCTTCTAGATATAATTGCACAGCATTGTCAGGATCCACAAGCCCTTGGAGATATTGAGAAACTCCCAGGTAATCAATTAAGTCCCACCAGCAGTGATGAAAGAACTTTGCAGATGCTCTTAGATGAGCCTGAGTTGAGTGGCAGTGACATTCTGGTTAATCTCCAAAATTCANCAGATCCAGCAAAACTTGTTTTGGATATAATACAGAACCCTATTATTCCACAGAATGNGAAGGGAAACGAAGGCATAATTATTAATACGGACCACATCTTTCTGTTGGAACACCTGGTGGGAATCTCGCCACATATTGAACCCCATGTAAGAGAAGAGGCAGTGAAGCTAGCAGTTGATTTGAAAGCAAACATGAGGGCAAGTACTGAAAATTCTTTGGAGGTTCTGGGTTTTCTACTGCTTTTGTCTATTTATGGATTAGTTTCTTATTTTGACGAAGANGAAGTTTTGGAGCTTTTTGAATTTGTTGCTCACCACGAGCAAGCTCGAGAGCTGTTTTGGACCCTTGGTTTTATGGATAATAAAATCTCTGATTATGTTCGGAATCTTACTGAGAAGCAGCAGCATATCAAAGCTGTTAGATTCATTTGTGCATATAATTTGACNGACAAGATCAAACCAGTTAATCTCTTGCGACAATATATGAAGAAAGCAAAACGGATTTCCAAGAGATCTGCGAAAAGAAAGTGCACTGAAAAGAAGGTCATGGCCAGAGATATNGAAATTGCTAGTCTGGGGGCAGTTCTACAGTGCATTTCAGATAACAANCTAGAAGAATCTGAGGCTCTAGTTAGAGAGATTAAACATCGCATTCCNGTGCTAGAAAGGCTTAAGCAAGACATCGTTCGTACTGCATCAGAGCCTTCCNCCATTGAAGTTAAAGTGCAACAACCTGAAGAAACAAAAAATGCCAATGAAGAAGCAGTCACCACCAAGAATCAAGTCAAAGTGCAACAACAACAACCTAAAGAGAAACTTGGACAAATGGAGAAATGGTCCAAATTTTTAATTCAAAAAAAAGAACGAAAGAAACGTCGGAATGAAGCAGTCACTAAGAATCAAGTTGAAGAGCCCCAACCAAAGAAACGTGGTAATGATAATGGAGGAGTCCTCATGAATCAAGTTGAAGTGGAGCAACCAGAAGAAGAGAAGGAACCTGCAAATGAAGCAGCCACCACGAGTCAAGTCAAAGTGCTGCAACAACAACCTGAAGGAAAGAAAGGTGCCAGTGAAGCAGCCACCGTGAATGATGCTAAAGNGCAACAACCTCAAGAAAAGAAACGTCCCAATGAAGCAGCCTCCAATAATAACAGCCATCAATTACATCAGGGGGGTGGAAACAGCAAACGTCCTCGTACAGATGCTGCAACACCACCACGGTCTGTGCCTCCCGACTTACTTGAGCCCTCATCATCACCATCATGCATTTATATCCTCCTCCAGATGCTGCAACACCACCACGGTCTGTGCCTCCCGACTTCAGCCCTCATCATCACCATCATGCATTTATACCTCCTCCTCCAGATGCTGCAACAACGGTCTGTGCCTCCCGTCTTCATCCCTCGTCATTACCATCATGCATTTATACCTCCGCGTCCACGTCCACCTCCACAGTTTGGGTTCCCAACTAACTACTATGGTTTTGCTAATCCTATGGGTGCAGGACGGTTTGGAAATCANGGGACAAATTATGTTTGTCACCCCCCTAGGCCTTATCCCCCCTTCTAGATGACCCATGTGAAATTCTTCTGTAGTTTCTGTACATGGTAGTTGTCTTTTAG

Protein Sequence

>Glyur001490s00024456.1
MGGSGPVVEPELERFIKENQSDYDALMQESIMESSAEFDLKEQELSLLRKSIDECRAKRKTEEQRLHSLERHIEERSKALESKEKQLGSVQRQLNLCCRDIDAKEREYGVVRRTVEDRNRELEAKGEILKSIEKKIRECERLLLAKEEECNWQLEVNHRLISECDEIHEKMQRTMQEYDTDLVAKESRLSLIEGMIMEREQELKTKDVEFHTIRREXEWKEEELVTLSAKIVEFNKEIRSKEEDLDAMQRLVNGQGKELEFKRKNLLRSMQERIDQLARELESNKKESDSLRRSTKERGFELDKKEKQIGESAKELESRKKKFEGRVKEFELKERRFEGQVKELKSKEMHFEGRMKEXESKEKHFEGRAKELESKEKQFEGTVKELESKEKRFEGQMKELXAKEKRFEGQVKALESGQKQFVVQMKEFESEKKQFEGQVKELEAKEKHFEGQVKELESEQKQFVGRVQGLESKEKHFEGQLKELESKLKHFEVQMKELESKQRQFVGRVQGFKSKEKQFEGQVKELESKQKDFEVERKELESKQKQFAGQVKEHESREKNFEARMKKLGSNEKQHEGRARELDXKEKQFEVRVKELDSKEKQFEGQMKDFESKXKQYEVRVKVLELKEAQCKVQLKEIKSKDRQFEEQMKDLESKKNQYEKQVKELELKEAQFKLQLKELESNEKQFQGQVEDLQSKKNQHEEQVKGLELKEAQFKLQLKEXESNEKQFEGRVKDLQSKKNQYEEQVKELELKEAQFKLQLKELESNEKQFEERVKDLETKQNQFEGQLKELELEEKQYQSLRKSFEXEKVLKEKSNILLHQVKTEELYFTDANSVNNSKNLVLLFNLLKKYELICSEVSDALRTSADPTKLVLDTIKGFCPPQSVQELVERDSNILRRICNLLMDELXQSSPVIGFHVKEEAMKLACEWKANIAVADADKGYLXVLDFLKFVATYEIGSSFNENELQRLLDIIAQHCQDPQALGDIEKLPGNQLSPTSSDERTLQMLLDEPELSGSDILVNLQNSXDPAKLVLDIIQNPIIPQNXKGNEGIIINTDHIFLLEHLVGISPHIEPHVREEAVKLAVDLKANMRASTENSLEVLGFLLLLSIYGLVSYFDEXEVLELFEFVAHHEQARELFWTLGFMDNKISDYVRNLTEKQQHIKAVRFICAYNLTDKIKPVNLLRQYMKKAKRISKRSAKRKCTEKKVMARDXEIASLGAVLQCISDNXLEESEALVREIKHRIPVLERLKQDIVRTASEPSXIEVKVQQPEETKNANEEAVTTKNQVKVQQQQPKEKLGQMEKWSKFLIQKKERKKRRNEAVTKNQVEEPQPKKRGNDNGGVLMNQVEVEQPEEEKEPANEAATTSQVKVLQQQPEGKKGASEAATVNDAKXQQPQEKKRPNEAASNNNSHQLHQGGGNSKRPRTDAATPPRSVPPDLLEPSSSPSCIYILLQMLQHHHGLCLPTSALIITIMHLYLLLQMLQQRSVPPVFIPRHYHHAFIPPRPRPPPQFGFPTNYYGFANPMGAGRFGNXGTNYVCHPPRPYPPF

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01490	55460	62222	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001490s00024456.1	PF07899.6	Frigida	839	980	1.60E-30
Glyur001490s00024456.1	PF07899.6	Frigida	1016	1258	5.80E-64

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.937
SRR1783600	control	8.278
SRR1783602	moderate drought stress	10.146
SRR1811619	moderate drought stress	10.123

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.033
DRR006520	Root Summer glycyrrhizin high producing strain	9.866
DRR006521	Root Winter glycyrrhizin high producing strain	14.220
DRR006522	Root Winter glycyrrhizin high producing strain	13.808
DRR006523	Root Summer glycyrrhizin low producing strain	8.549
DRR006524	Root Summer glycyrrhizin low producing strain	8.363
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.706
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.306

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.579
SRR2868004	Drought Stress (root)	10.459
SRR2967015	Control (root)	12.174

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.461
SRR9715740	Leaf	3.037
SRR9715741	Leaf	2.530
SRR9715739	Root	0.426
SRR9715742	Root	5.570
SRR9715743	Root	4.192

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.800
SRR8749028	MeJA induced 9h	20.024
SRR8749029	MeJA induced 9h	15.650
SRR8749030	Uninduced	10.313
SRR8749031	Uninduced	23.513
SRR8749032	Uninduced	16.977

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.561
SRR8400027	Control - Root	9.828