Gene detail information of Glyur001490s00024454 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G05642.1 | 3.00E-10 | Nucleic acid-binding, OB-fold-like protein |
| NR | XP_003599985.1 | 1.60E-61 | ATP-dependent DNA helicase PIF1 [Medicago truncatula] |
| trEMBL | tr|G7J219|G7J219_MEDTR | 4.00E-61 | DUF223 domain protein {ECO:0000313|EMBL:AES70520.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01490 | 48755 | 52179 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001490s00024454.1 | PF02721.9 | DUF223 | 146 | 240 | 5.30E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.055 |
| SRR1783600 | control | 2.028 |
| SRR1783602 | moderate drought stress | 14.697 |
| SRR1811619 | moderate drought stress | 14.148 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.102 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.774 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.500 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.499 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.868 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.604 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.228 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.312 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.279 |
| SRR2868004 | Drought Stress (root) | 0.159 |
| SRR2967015 | Control (root) | 0.293 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.602 |
| SRR9715740 | Leaf | 5.878 |
| SRR9715741 | Leaf | 3.614 |
| SRR9715739 | Root | 3.896 |
| SRR9715742 | Root | 4.752 |
| SRR9715743 | Root | 3.919 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 52.877 |
| SRR8400027 | Control - Root | 75.735 |