Gene detail

Gene detail information of Glyur001490s00024451

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G11060.1	2.00E-76	mitochondrially targeted single-stranded DNA binding protein
NR	XP_004495682.1	8.61E-130	PREDICTED: single-stranded DNA-binding protein, mitochondrial-like [Cicer arietinum]
COG	YP_004088888.1	4.00E-12	single-strand binding protein [Asticcacaulis excentricus CB 48]
Swissprot	tr\|Q84J78\|SSBP_ARATH	1.00E-95	Single-stranded DNA-binding protein, mitochondrial (Precursor)
trEMBL	tr\|G7I9F0\|G7I9F0_MEDTR	4.00E-127	Uncharacterized protein {ECO:0000313\|EMBL:AFK34793.1}

Sequence

Transcript Sequence

>Glyur001490s00024451.1
GTTCGTTCCACTTTGCAGGTTGTTTGCTGGAAATGAATTCTGTGGCGGTAAGACTTGCGAAGCATCTGCGAGTTTCTTCTCTGATCTCCTCTTCCCACGCTGGTGTGCCGAGAAGCGGGACCATATGGTACTCAACGTTGCTATCTGAAAGTGATGTTGATCAGCCTTCATCTGATAAGGATGGACCAACCAACGAAGAGTTGGATGAAGAAATTGATGATTTCCTTGGTAGCAAGCCTGAGCTACAACTGCAAGGTGTGGATCCCAAAAGAGGTTGGGGATTTCGGGGTGTGCACAAGGCAATTATTTGTGGAAAAGTTGGCCAAGCCCCTGTACAGAAGATATTAAGGAATGGGAAGAATGTAACCATCTTTACAGTTGGGACAGGGGGGATGTATGACCAGAGAATTGTAGGAGCTAAGGATTTGCCGAAACCTGCTCAATGGCATCGGATTGCCGTGCATAATGATGTACTGGGGGCTTATGCAGTCCAACAAATTTTTAAAAATTCTTCAGTTTATGTTGAGGGTGAGATTGAGACTAGAGTTTATAATGATAGCATTAATGGTGAAGTTAAAAGCATTCCAGAGATATGTGTTCGTCGTGATGGGAAAATTCGTCTCATCAAGAGTGGAGAGAGCGTTGATAAAATTTCCTTGGATGAGTTGCGTAAGTTCTTTTAACTACATTTGCAAATAATGACATGTTATTACAGTAGTTTCCACACGCTTTACTTTATGACAATATTTCTGGAACTGGAAGTTCTGTGGGGACTCATCGTTACTGTTAAGATCAAAGTTTTTGTCATTGATTGTGTTATATATTAATGCTGGCAGGAGAGGGGTTGTTTTAGAAGAAAGCTGCCCATTTAATGGAGTAATGGAAGCATCTACATCTGTTAAGAATCACCGCTTTGTCTTGAGTAGCAGCATTTGTAATGAACACCATAACGAATACTTGGTTTGTTTTTATTTTTTCATTTAATCCTTTAGCTCTCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01490	18345	20724	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006260 DNA replication

molecular_function
GO:0003697 single-stranded DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001490s00024451.1	PF00436.20	SSB	88	190	8.20E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.266
SRR1783600	control	5.304
SRR1783602	moderate drought stress	5.161
SRR1811619	moderate drought stress	5.148

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.526
DRR006520	Root Summer glycyrrhizin high producing strain	11.642
DRR006521	Root Winter glycyrrhizin high producing strain	10.181
DRR006522	Root Winter glycyrrhizin high producing strain	9.994
DRR006523	Root Summer glycyrrhizin low producing strain	10.859
DRR006524	Root Summer glycyrrhizin low producing strain	10.691
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.691
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.794

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.256
SRR2868004	Drought Stress (root)	16.711
SRR2967015	Control (root)	15.760

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.067
SRR9715740	Leaf	9.711
SRR9715741	Leaf	5.959
SRR9715739	Root	4.065
SRR9715742	Root	6.003
SRR9715743	Root	5.443

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	41.675
SRR8749028	MeJA induced 9h	16.738
SRR8749029	MeJA induced 9h	20.768
SRR8749030	Uninduced	6.303
SRR8749031	Uninduced	4.045
SRR8749032	Uninduced	3.754

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.012
SRR8400027	Control - Root	17.606