Gene detail information of Glyur001490s00024449 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G40650.1 | 4.00E-95 | PRP38 family protein |
| NR | KHN20264.1 | 2.32E-170 | Pre-mRNA-splicing factor 38A [Glycine soja] |
| Swissprot | tr|Q8LB54|PRP38_ARATH | 5.00E-118 | Pre-mRNA-splicing factor 38 |
| trEMBL | tr|I1NJ40|I1NJ40_SOYBN | 1.00E-170 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G38250.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01490 | 12557 | 15784 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001490s00024449.1 | PF03371.10 | PRP38 | 9 | 175 | 5.90E-67 |
| Glyur001490s00024449.1 | PF12871.2 | PRP38_assoc | 179 | 276 | 2.40E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 142.522 |
| SRR1783600 | control | 142.855 |
| SRR1783602 | moderate drought stress | 236.056 |
| SRR1811619 | moderate drought stress | 234.304 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 182.227 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 178.960 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 119.276 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 116.975 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 185.301 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 187.862 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 49.582 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 48.873 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 104.414 |
| SRR2868004 | Drought Stress (root) | 98.475 |
| SRR2967015 | Control (root) | 120.695 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 47.358 |
| SRR9715740 | Leaf | 52.319 |
| SRR9715741 | Leaf | 52.188 |
| SRR9715739 | Root | 25.474 |
| SRR9715742 | Root | 82.647 |
| SRR9715743 | Root | 67.979 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 101.673 |
| SRR8749028 | MeJA induced 9h | 69.742 |
| SRR8749029 | MeJA induced 9h | 82.818 |
| SRR8749030 | Uninduced | 51.108 |
| SRR8749031 | Uninduced | 71.264 |
| SRR8749032 | Uninduced | 79.094 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 127.455 |
| SRR8400027 | Control - Root | 114.986 |