Gene detail

Gene detail information of Glyur001486s00034313.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G47570.1	5.00E-162	Leucine-rich repeat protein kinase family protein
NR	XP_004512338.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Cicer arietinum]
COG	YP_004775215.1	3.00E-46	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|C0LGP4\|Y3475_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At3g47570 (Precursor)
trEMBL	tr\|G7KI99\|G7KI99_MEDTR	0	LRR receptor-like kinase family protein {ECO:0000313\|EMBL:AES75308.1}

Sequence

Transcript Sequence

>Glyur001486s00034313.1
ATGCCTACATTTTCTCTTTGGTTATATCTCCTCTTTGCTTTCAACTTCAGCCCAAAAACAATTGCCTTTACATTAGGAAACCGTACTGACAATTTGGCATTGCTCAAATTCAAGGAATCAATATCCAGTGACCCATATGGAATTTCTCTTAGAATAGTTCAACCCACTTTTGCAACTGGCATGGAATTACATGTAGCCATATGCATCAAAGAGAGAAGTTTCATCATATTTTCTCTAACCATTGAGTCAATTACACAGAATCACTTTGATGGTGCTCTTCCACCCAACATGTTCCANACCCTCCCCAATCTCCAAGTTTTTGCAATTGCCGTAAATCAATTCTCAGGTCCAATCCCTACTTCTTTTGCTAATGCTTCTACCTTGCCATTATTTGATATCAGTCAAAATCGTTTTTTCAGACAAGTTCCAAGTCTAGAAAAGCTACAAGATCTATTGATACTAAATTTGGAAAACAACAATTTAGGTGACAATTCAACTATGGATTTGGAGTTTTTCAATTCATTGACAAATTGTAGTAATTTACAATTGATCTCTACATCCCTTAATAATTTTGGAGGTCGTCTNCCAAATTCCATAGGTAATTTATCCACTCAACTTAGTCAACTATATCTTGGGGGTAATCAGATATCAGGAAAAGTTCCTAAGGAATTGGGAAATCTAATTGGCTTAACTCTCATGGCCTTGGAACTTAACCACTTTGAAGGAGCTATTCCAGCTACTTTTGGGAAGTTCCAAAAGATGCAAGTGTTGGCTTTGAGTCAAAATAAACTGTCAGGAGATATACCAACCTTCATAGGCAATCTTAGTCAATTATTTTACTTGGATTTTGGACAAAATATGCTAGAAGGAAATATTCCCCCAAGTATAGAAAACTGTCAAAAGTTACAACACCTAAACCTTTCACAAAACAATCTGAGAGGAACCATACCCTTAGAGGTTTTTAGTTTGTCCTCTTTATCAATCTTACTGGACTTGTCACAAAACTCATTGAGTGGTAGCTTACCGAAAGAAGTNGGTATGCTAAAAAATATCGATAATTTAGATTTAGATGTCTCTCAGAATCATCTNTCCGGTGACATTCCTGGAACCATTGGTGAGTGCACAAGCTTAGAATACCTCCATATGCAAGGTAACTCCTTCCACGGAATCATACCGTCCTCTTTGGCTTCTCTCAAAGGTCTTCGATATTTAGACATGTCAAGAAATCAGTTCTCTAGACCTATTCCCAAAGTTCTACAGAATATTTCTTTTTTAGAACACTTGAATGTTTCTTTTAACATGTTAGAGGGCGAGGTACCATCTGATGGTGTCTTTGGCAATGTAAGTGGGTTTATAGTGACTGGAAATAATAAGNTTTGTGGAGGAGTTCAACAGTTGCATCTACCACCATGCCTTGCCACGGGTACAAAAACTTTAGTACATCATAAATTTAAGTTGATAGTTGTGATAGTTTGCGTGGTTGCTTTTTTCTTCATACTATCATTTATTCTAGCTATCTATTGGATCAGCAAAGCAAGTAAGAAAACTTCTTTTGATTCACCAACAATTGATCAAGTGATCAAGGTTTCATACCAAAACCTTCACCATGGAACCAATGGGTTCTCAGTTGAAAATTTGATAGGATCAGGAAATTTTGGCTCAGTGTACAAAGGTTTTCTTGAGTCAGAAGATAAAGTTGTTGCAATAAAGGGAGCTCACAAGAGTTTCATTGCCGAATGTAATGCACTTAAAAGTATTAGACATCGAAATCTGATTAAGATTTTAACATGTTGTTCTAGTACAGATCACAAAGGTCATGATTTTAAAGCACTGGTTTTTGATTACATGAAAAATGGAAGCTTAGAACAATGGCTGCATCCCGAGACAGTAAATGTAGAGCATCGAAGAATGTTGGACCTTGCTCAACNACTAAATATCATTATTGATGTTGCTTCTACATTGTATTATCTTCATCATGAATGTGAGCAATCGATCCTTCATTGCGATTTAAAGCCAAGCAATGTCCTTCTTGACAATAATATGGTTGCTCATGTGAGTGATTTTGGCATAGCAAGACTTGTCTCAACTATTGATGATACCTCTCATAAGCAAACTAGTACAATNGCAATCAAGGGAACTGCTGGCTATGCTCCTCCAGAATATGGAATGGGTTCCGAGGTGTCTACTTCTTGCGATGTGTATAGCTTTGGGATTCTTATGCTGGAAATGCTCACAGGAAGAAGACCCACAAATGATACGTTTGAAGATGGTCAAAATCTTCACAACTTTACCCGTCTTGTTCCAAGAGATGAAGAAGCAGATTTGGAAGAAGAAAACAATGGGAACCTTAATCCAAAAGCTGAGAAGTGCTTAATTTCAATTTTTAGAATTGGACTTGCTTGTTCTGTGGAAACACCAAAAGAAAGAATGAGTATGGTGCATTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01486	60991	65429	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001486s00034313.1	PF13855.1	LRR_8	255	312	8.20E-08
Glyur001486s00034313.1	PF13855.1	LRR_8	355	410	6.00E-08
Glyur001486s00034313.1	PF00069.20	Pkinase	543	779	5.70E-42

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.161
SRR1783600	control	0.183
SRR1783602	moderate drought stress	0.096
SRR1811619	moderate drought stress	0.073

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.415
DRR006520	Root Summer glycyrrhizin high producing strain	0.464
DRR006521	Root Winter glycyrrhizin high producing strain	0.071
DRR006522	Root Winter glycyrrhizin high producing strain	0.081
DRR006523	Root Summer glycyrrhizin low producing strain	0.659
DRR006524	Root Summer glycyrrhizin low producing strain	0.622
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.092
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.112

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.717
SRR2868004	Drought Stress (root)	0.631
SRR2967015	Control (root)	0.895

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.184
SRR9715740	Leaf	0.398
SRR9715741	Leaf	0.873
SRR9715739	Root	0.035
SRR9715742	Root	0.270
SRR9715743	Root	0.202

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.072
SRR8749028	MeJA induced 9h	0.773
SRR8749029	MeJA induced 9h	0.286
SRR8749030	Uninduced	1.076
SRR8749031	Uninduced	1.446
SRR8749032	Uninduced	0.326

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.475
SRR8400027	Control - Root	0.534