Gene detail

Gene detail information of Glyur001484s00040278

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G37710.1	0	receptor lectin kinase
NR	XP_004492166.1	0	PREDICTED: L-type lectin-domain containing receptor kinase IV.1-like [Cicer arietinum]
COG	YP_003640725.1	1.00E-24	serine/threonine protein kinase [Thermincola potens JR]
Swissprot	tr\|O80939\|LRK41_ARATH	0	L-type lectin-domain containing receptor kinase IV.1 (Precursor)
trEMBL	tr\|Q6UY59\|Q6UY59_MEDTR	0	Lectin-like receptor kinase 7;2 {ECO:0000313\|EMBL:AAR11299.1}

Sequence

Transcript Sequence

>Glyur001484s00040278.1
ATGTCCCTCAAGCTTGTGTGGGTGGTCTTACTTCTGGTTACAACTGTAGCCAGTGCTGAAGATAGCGGTTTCACCTATAATGGGTTCCAATCATCTCATTTGTATCTTGATGGTATTGCCAAGTTAACCCCCAATGGCCTATTGAGACTCACCAATGACACCAAGCAACAAAAGGGTCAAGCTTTCCACCAAAATCCTATAGTTTTCAAGAACAACACCTTCAATGGAACCGTGTCCTCTTTCTCCACCACTTTTGTGTTTGCCATAAGACCTGAGTACCCAATTATGAGTGGTCATGGGATTGTTTTTGTGGTTTCTCCCACAAAAGGGATTCCAGATTCTCTTCCAAATCAGTACCTTGGCCTCTTCAATAACACCAACAACGGCAACAGTAGCAACCATGTCTTTGGGGTTGAACTTGACACCATTCAGAGCAATGAGTTTGGTGATATCAATGACAACCATGTTGGAATTGATATCAATGACTTGAATTCAGCTAATTCAACCCCTGCAGGATATTATAGTAGTGGTGGTGGTGGGTTTAAGAATTTGACCCTTTCCAGTGGCTACCAAATGCAGGTGTGGGTGGAATATGATGGGGTAAAGAAGCAGATTGATGTTACTTTAGCTCCAATCAACATTGGTAAACCAGAACAACCTTTGTTATCATTGACCAAGGATCTTTCTCCAATTCTGAACAATAGCATGTATGTTGGATTCTCATCCACTACTGGGTCATTCCTTACTTCACACTATGTTCTTGGTTGGAGCTTTAAGGTCAATGGCAAGGCTCAACCACTAGTAATCTCTGAACTCCCTAAGCTTCCTAGACTTGGTGATAAAAAGGAGTCCAAGTTTTTGACAATTGGGTTGCCTTTGATATTGCTTAGTTTGGTTTTCACGATAACTTTATTGGTGCTTCATATCATCAAGAGGAAGAAGAAGTTTGCTGAGCTGCTTGAAGATTGGGAGCAGGAATATGGCCCACATAGATTCAAGTTCAAAGATCTTTACTTTGCCACAAAGGGGTTCAGGGAGAAGGAGCTATTGGGAGCTGGTGGGTTTGGGAAAGTCTACAAAGGTGTGATGCCAGTTTCCAAAACTGAGGTTGCAGTGAAGAGGGTGTCCCATGAATCAAGACAAGGGATGAGGGAATTCGTGTCAGAAGTTGTTAGCATTGGTCGTCTCCGCCACCGGAATCTGGTTCCCCTTCTGGGCTATTGCAGGCGCAAAGGCGAGTTGCTTTTGGTCTATGACTACATGCCAAATGGAAGCCTAGACAGGTACCTACACAACCAACCAAGAGTGACCTTGAATTGGAGCCAGAGATTCAGAATCATCAAAGGGGTTGCCTCAGGTTTGTTTTATCTACATGAGGAATGGGAGCAAGTTGTGATCCATAGAGACATAAAGGCTAGCAATGTGTTGCTAGATGCAGAATTGAATGGTAGATTGGGGGATTTTGGTCTTGCAAGGTTGTATGACCATGGAACTGACCCCCAAACTACCCATGTGGTTGGGACTCTTGGGTATCTGGCCCCTGAACATACCAGAACAGGTAAGGCCACTAAAAGCTCTGATGTGTTTGCTTTTGGTGCATTTTTGCTTGAGGTTGCTTGTGGTAGGAGGCCTATAGAGCATGTAGGGGAATGTGAGAGTGTAATCCTAGTTGATTATGTGTTTGATTGTTGGAAGAGAGGTGAGATTCTTGATGCAAAGGATGCAAACTTGGGCACTGATTATAGCTCACAGGAGGTGGAGTTGGTTTTGAAGCTTGGTTTATTGTGTTCACATGCAGAACCTTTGACTAGACCAAGCATGCGCCTAGTAGTGCAGTACTTGGAGATGGATGTGCCTATGCCTGATTTGTCTTTGCTTAGCATATCTTCTTCTGGCTTAACTTTTGGGCACCACCATCAAGGCTTTGAGGACTTTCCAATGTCTGACTCCTATCCATCTTCTAAGGATAATAAGCCACTCCTCCATACTACTACTACTACTACCGATACTTCCACTTCAGTTGCTGAATCACATCTCTCTGGTGGTCGTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01484	43790	45841	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.11.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

GO:0030246 carbohydrate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001484s00040278.1	PF00139.14	Lectin_legB	22	259	2.80E-83
Glyur001484s00040278.1	PF00069.20	Pkinase	345	548	1.10E-46

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.139
SRR1783600	control	2.176
SRR1783602	moderate drought stress	1.745
SRR1811619	moderate drought stress	1.716

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.790
DRR006520	Root Summer glycyrrhizin high producing strain	0.851
DRR006521	Root Winter glycyrrhizin high producing strain	0.652
DRR006522	Root Winter glycyrrhizin high producing strain	0.505
DRR006523	Root Summer glycyrrhizin low producing strain	0.350
DRR006524	Root Summer glycyrrhizin low producing strain	0.538
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.584
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.199

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.743
SRR2868004	Drought Stress (root)	1.268
SRR2967015	Control (root)	1.163

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.704
SRR9715740	Leaf	4.046
SRR9715741	Leaf	5.122
SRR9715739	Root	0.201
SRR9715742	Root	2.356
SRR9715743	Root	1.907

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.002
SRR8749028	MeJA induced 9h	1.837
SRR8749029	MeJA induced 9h	0.873
SRR8749030	Uninduced	0.941
SRR8749031	Uninduced	0.430
SRR8749032	Uninduced	0.373

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.483
SRR8400027	Control - Root	0.812