Gene detail information of Glyur001482s00036656 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G54980.1 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | XP_004514126.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g54980, mitochondrial-like [Cicer arietinum] |
| Swissprot | tr|Q9SV46|PP282_ARATH | 0 | Pentatricopeptide repeat-containing protein At3g54980, mitochondrial (Precursor) |
| trEMBL | tr|G7JQM0|G7JQM0_MEDTR | 0 | PPR containing plant-like protein {ECO:0000313|EMBL:AES89522.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01482 | 1268 | 3775 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001482s00036656.1 | PF01535.15 | PPR | 153 | 180 | 0.0056 |
| Glyur001482s00036656.1 | PF01535.15 | PPR | 190 | 215 | 0.42 |
| Glyur001482s00036656.1 | PF01535.15 | PPR | 223 | 251 | 0.019 |
| Glyur001482s00036656.1 | PF13812.1 | PPR_3 | 258 | 289 | 0.0052 |
| Glyur001482s00036656.1 | PF13041.1 | PPR_2 | 293 | 337 | 3.30E-08 |
| Glyur001482s00036656.1 | PF13041.1 | PPR_2 | 360 | 408 | 4.70E-09 |
| Glyur001482s00036656.1 | PF01535.15 | PPR | 431 | 461 | 0.0011 |
| Glyur001482s00036656.1 | PF13041.1 | PPR_2 | 463 | 512 | 5.50E-16 |
| Glyur001482s00036656.1 | PF12854.2 | PPR_1 | 530 | 553 | 1.30E-06 |
| Glyur001482s00036656.1 | PF13041.1 | PPR_2 | 568 | 617 | 9.20E-17 |
| Glyur001482s00036656.1 | PF13041.1 | PPR_2 | 640 | 686 | 6.90E-12 |
| Glyur001482s00036656.1 | PF13041.1 | PPR_2 | 712 | 757 | 2.80E-13 |
| Glyur001482s00036656.1 | PF13041.1 | PPR_2 | 778 | 824 | 9.90E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.262 |
| SRR1783600 | control | 3.373 |
| SRR1783602 | moderate drought stress | 3.036 |
| SRR1811619 | moderate drought stress | 3.085 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.162 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.091 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.045 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.905 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.800 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.710 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.557 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.477 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.579 |
| SRR2868004 | Drought Stress (root) | 5.198 |
| SRR2967015 | Control (root) | 4.559 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.567 |
| SRR9715740 | Leaf | 1.844 |
| SRR9715741 | Leaf | 1.429 |
| SRR9715739 | Root | 1.757 |
| SRR9715742 | Root | 4.037 |
| SRR9715743 | Root | 3.118 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.331 |
| SRR8749028 | MeJA induced 9h | 3.124 |
| SRR8749029 | MeJA induced 9h | 0.656 |
| SRR8749030 | Uninduced | 0.797 |
| SRR8749031 | Uninduced | 0.350 |
| SRR8749032 | Uninduced | 0.161 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.128 |
| SRR8400027 | Control - Root | 6.222 |