Gene detail

Gene detail information of Glyur001481s00033621.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G14340.1	0	casein kinase I
NR	XP_007223111.1	0	hypothetical protein PRUPE_ppa005419mg [Prunus persica]
COG	YP_632759.1	1.00E-17	serine/threonine-protein kinase PKN1 [Myxococcus xanthus DK 1622]
Swissprot	tr\|P42158\|KC1D_ARATH	0	Casein kinase I isoform delta-like
trEMBL	tr\|M5XYH5\|M5XYH5_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ24310.1}

Sequence

Transcript Sequence

>Glyur001481s00033621.1
CAATGATAATAGCTCCTCAATCATCCACTTTCTCATCCATTTTTTCCGCTAGAAAGAATCTCAAAAATTTTCGTAGCTCACTTAATTTTCTCCACAGTCCACACACACAGATCCGAAAGGGTCACTCCAAAATCCACACTCATAAATCACTTCTTTTTGCGCGAATGTCGCAGGCACCGTTTTCGCGTTTCTAGCTCATTTTTTCCCTCTCTTTCTCTCTCTAGAAACGAAGTAAACGGGGGTTTCTTCTCACGACCCAGATTCGCGCTTGNTTCGATTCAAAGGCTTTTGATCAAAAGCTTCATTTTTTGTTGTGGGGGTATTGACAGTAGAAATCCTGAGTTTTCGAGTGATTCAATACGGCACCGTTTTCATGGATCTGAGATGAGATATTCGGAATAGAACATTTTTAATTTATTTTTCCTTCTAGTAACTTGTGTGTTTAGTAGAGTGGCTTGTAGTTTAGCAAGAGAAAAAGAGAGGAGGTTGAGTTTGGTGGTGTATGTTTGATTGGGGTTGTGATCATGGATCATGTTATTGGTGGAAAATTCAAGCTTGNGAGGAAAATTGGGAGTGGATCATTTGGCGAGCTTTATTTGGGTGTTAATGTGCAAACTGGAGAGGAAGTGGCTGTCAAGCTGGAATCTGTGAAGACCAAGCATCCTCAACTTCTCTATGAGTCAAAACTGTATATGCTTCTTCAAGGAGGAACCGGCATACCTCATTTAAAATGGTCTGGAGTTGAGGGCGACTACAATGTCATGGCTATTGACCTCCTTGGACCAAGTCTTGAAGACTTGTTTAACTATTGCAATAGAAAATTATCTCTGAAAACAGTTTTGATGCTTGCAGATCAGCTTTTAAACAGAGTAGAGTATATGCACTCCCGGGGATTTCTGCATCGTGATATAAAGCCTGACAACTTTTTAATGGGATTAGGCCGCAAGGCAAATCAGGTATACATTATTGATTATGGCCTTGCAAAAAAGTATCGTGATCTTCAAACACATAAGCATATACCATACAGAGAAAACAAGAATCTCACTGGAACTGCTCGATATGCCAGTGTTAACACTCACCTTGGAATTGAACAAAGCAGACGAGATGATCTAGAATCGCTTGGTTATGTGCTAATGTACTTTTTGAGAGGAAGTCTTCCCTGGCAAGGCTTGAAAGCTGGCACTAAGAAGCAGAAATATGACAAGATAAGTGAAAAGAAGATGCTGACTCCAATNGAGGTCTTGTGCAAGTCACATCCATCAGAGTTCACATCTTACTTCCACTATTGCCGATCATTGCGGTTTGAAGATAAACCTGATTATTCATATCTCAAGAGACTCTTTCGGGACCTCTTCATTAGAGAAGGTTATCAGTTTGACTATATATTTGATTGGACTATATTAAAGTATCCACAAATTGGATCCAGTTCTAGAGCTCGACCAAGTGCGAAACCGGTCTTAAACCCAGGACCATCAGGAGAGAGATTAGAACGCCCTTCAGTTGGAAAAGAGATTCGGGACAGATTATCAGGTGCAGTGGATGCATTTTCAAGAAGGAATAGCTCTCGGCATGGACTGCATCATGATCTTTCCAGGCATAGGTCTTTAGATGATGGGCCATCTTCCAAAGATGTGCAACCTGATTCTGACAGGGCTCGCAGTTCTTCTCGCAATGGCAGTGCTTTGAAAAGGCCNGTCATATCAAGCAGCAGACCGAACTCTTCTGGAGAACCTACTGAGAGCCGTTCNAGTCGATTGGTCTCAGGCAGCGGTCGTCTATCTACTACTCAGAGGGTTCAACCAGGTTTTGAGCCCTCCAAATCATCATCCTTTACCCGTGCTGCAGGGACAAGAGGTGGTCGNGATGATGCACTCAGGAGCTTTGAGCTCCTGTCAATCGGTACAGGGAAAAGGAAATGAGGGGTCCCTGTGGTCAAAACATTGCCNTCTACTTTCTTGAGACCCTTCACACCTGTTCATTTACTGTGTATATTTCAATTGTGTTGGGGTCCATTCAAAGGCTAAAAGCTAGTAAATTTCTTAATGAAGCTTTGGCAGACACTCCTCTTATGCCCTCTTCAGATGTTCTTCCATGATAATTTCAGCATGGACCCATTCATGAAGAGTCTCTTATCTTTAGGAAGAACATGTTTTATACATGAAAGATGGCTACTTGTAATAAATACACTCTACATTTTTCTGTTGAACAAAAGGAAAAAAAAAACTGCAAAGTCGAATATGCTTTGCAAGTTTTTACACCCTTTCAGTGCCATAATTGGGACCTTTCTATTTTGTCCCTTATGTACATTGAGGGAATGCAATTGTTCTCTGGATTAGAGAGAAAATTGTGAAACAGTGCAAGTGGAAATTGTGCAACTTTTGTTCAATTTCAAAATCGTCTGGAGCCTCTCTGGCTTAAAGCTTTGGCAGGCTGCTATAAAGTGTGTTGTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01481	20161	27205	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:3.1.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001481s00033621.1	PF00069.20	Pkinase	9	261	1.60E-36

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.361
SRR1783600	control	12.631
SRR1783602	moderate drought stress	13.524
SRR1811619	moderate drought stress	13.552

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.402
DRR006520	Root Summer glycyrrhizin high producing strain	18.456
DRR006521	Root Winter glycyrrhizin high producing strain	22.020
DRR006522	Root Winter glycyrrhizin high producing strain	21.405
DRR006523	Root Summer glycyrrhizin low producing strain	20.502
DRR006524	Root Summer glycyrrhizin low producing strain	20.045
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.524
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.650

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	33.547
SRR2868004	Drought Stress (root)	33.610
SRR2967015	Control (root)	34.139

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	26.532
SRR9715740	Leaf	28.423
SRR9715741	Leaf	32.959
SRR9715739	Root	10.546
SRR9715742	Root	20.434
SRR9715743	Root	17.666

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.835
SRR8749028	MeJA induced 9h	20.163
SRR8749029	MeJA induced 9h	8.740
SRR8749030	Uninduced	6.757
SRR8749031	Uninduced	4.065
SRR8749032	Uninduced	5.090

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	33.612
SRR8400027	Control - Root	33.390