Gene detail information of Glyur001480s00032561.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G45400.1 | 4.00E-172 | exostosin family protein |
| NR | XP_003517832.1 | 0 | PREDICTED: xylogalacturonan beta-1,3-xylosyltransferase-like [Glycine max] |
| Swissprot | tr|Q6DBG8|ARAD1_ARATH | 6.00E-79 | Probable arabinosyltransferase ARAD1 |
| trEMBL | tr|I1J5Z4|I1J5Z4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G07060.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01480 | 44635 | 47011 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT47 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001480s00032561.1 | PF03016.10 | Exostosin | 123 | 425 | 1.50E-60 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 24.561 |
| SRR1783600 | control | 24.405 |
| SRR1783602 | moderate drought stress | 7.452 |
| SRR1811619 | moderate drought stress | 7.303 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.192 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.386 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.046 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.090 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.079 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.157 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.635 |
| SRR2868004 | Drought Stress (root) | 7.213 |
| SRR2967015 | Control (root) | 9.994 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.003 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 10.410 |
| SRR9715742 | Root | 7.185 |
| SRR9715743 | Root | 8.265 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 15.434 |
| SRR8749028 | MeJA induced 9h | 8.807 |
| SRR8749029 | MeJA induced 9h | 5.030 |
| SRR8749030 | Uninduced | 1.928 |
| SRR8749031 | Uninduced | 1.101 |
| SRR8749032 | Uninduced | 1.192 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.590 |
| SRR8400027 | Control - Root | 13.205 |