Gene detail

Gene detail information of Glyur001477s00034096

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G38200.1	0	SEC7-like guanine nucleotide exchange family protein
NR	XP_003519698.1	0	PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1-like isoform 1 [Glycine max]
COG	YP_007567780.1	4.00E-30	RalF protein, translocated into host cells by the Dot/Icm system [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
Swissprot	tr\|F4JSZ5\|BIG1_ARATH	0	Brefeldin A-inhibited guanine nucleotide-exchange protein 1
trEMBL	tr\|I1JJW7\|I1JJW7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G48200.1}

Sequence

Transcript Sequence

>Glyur001477s00034096.1
AGGTTGACTACAATCCCCATGTTGGAGAGTCTCAACAATTTCAATCTTCCGTTGTATTTTTCATTGTTGAAAGAAAATGTCCGCATCACAATCTCTTGGAGGTCCTTCACGCTGTGGCCGAGTCCTAGGTCCATCACTCGACAAGATAATCAAGAACGCCGCCTGGCGTAAGCACTCTCACCTTGTCTCCTCCTGTAAATCCACCCTCGACAAGCTCGAATCCCTCTCTGAGTCTGAATCGTCTTCAGGCGATNCCCAATCCCCTCTTCTAGGTCTATCCTCCTCAGATGCCGAATATGTTCTTCAACCCCTCTTGCTTGCGCTTGACTCTGCCTACGCTAAGGTTGTTGAGCCTGCTCTTGAATGCACCTTTAAATTGTTCTCTCTCGGTCTTCTATGTGGCGAGATCGATCGCCCAGATAAATCGACTGTGGGCGTTGTCTTCAATATGATTGATTCTATCTGTAAGTCGGGTGGCCTAGGCGAGGAGGCAATTGAGCTGGGCGTGCTCAGAGTCTTGCTTTCGGCTNTGAGATCGCCCTGCATCTTGATCCGGGCAGATTGCCTGATTCAAATTGTGAGAACTTGTTATAATGTGTACCTCGGGGGGGTAAACGGCACTAATCAGATCTGTGCTAAGTCGGTTCTTGCCCAGATCATGACTATTGTTTTCACCAGAGTCGAGGAAGACTCTATGGATGTCTCCGTTAAAAGAGTTTCTGTCAGTGAACTTTTGGAATTCACTGATAAGAATTTGAACGAGGGCAATTCCATACATTTTTGCCAAAATTTTATCAATGAGGTAATGGAGGCCAGTGAGGGTGTTCCTCTCAAGCCACCGTCTATATCACCTCCTCTGGAAGTATCGAATGCCTGTGCACCGTTGTCCAAGGAAGTGGATGAAACAGGCACCGANAAGTTCCATAATGAAGCTGGACCTGATGGAAGTAAAATAAGGGAGGATGGTTTTCTTCTCTTTAAAAATTTGTGCAAATTGTCCATGAAATTCTCATCTCAACAACACCCTGACGATCGTATCCTCTTGAGAGGGAAAATTTTGTCCTTGGAGCTCCTTAAGGTAGTCATGGATAATGGCAGCTCATTATGGCGCGTGAATGAGAGGTTTCTCAATGCCATCAAGCAGTATCTTTGCTTGTCATTATTAAAGAACAGTGCCCTTTCAGCAATGGCCATTTTCCAGCTTCAGTGTTCCATTTTCATGAACTTGTTATCAAAATTTAGATCAGGCTTGAAAAAGGAAATTGGCATGTTTTTTCCCATGCTTATCCTCCGAGTTCTTGAGAATGTTCTTCAGCCCAGTTTTCTGCAAAAAATGACTGTCCTCAACTTATTGGACAAAATATCTCAAGATCCTCAGATTATCATTGACATTTTTGTCAATTATGATTGTGATGTGGATGCTTCAAACATATTTGAAAGGATTGTCAATGGACTTCTGAAAACTGCGTTGGGACCACCCACGGGGTCGACCACATCTTTGTCTCCAGCACAGGATATTACTTTCCGATATGAATCTGTGAAGTGCCTGGTCAGCATCATTAAGTCAATGGGAGCATGGATGGACCAGCAGATAAGGGTAGGAGACTTATTTATAGCAAAGAGCCCTGAAAGCAGTAGCGTAGTGGAGAGTCATCTAATGCTAAATGGAGAAGAAGGAAATGCTTCTGATCTTGAGTTGCATCCTGATGTAAATTCTGAATTTTCAGATGCTGCCACACTAGAGCAGCGCCGAGCATATAAAATCGAGCTTCAGAAAGGTATTACAGTTTTTAATAGAAAACCTTCCAAGGGTATTGAGTTCTTGATAAGCAACAAAAAAATTGGTAGTTCTCCAGAAGAAGTGGCTCTGTTCCTGAAGAATACTGGTGGCCTTGATGAGACCAAGATTGGTGACTATTTGGGGGAAAGGGAGGACTTTTCTCTAAAAGTTATGCATGCTTACGTAGATTCCTTTAACTTCAAAGGGATGGATTTTGGTGAAGCTATACGATTTTTTCTTCAGGGCTTTAGGTTGCCTGGTGAGGCACAGAAAATTGATCGCATTATGGAGAAGTTTGCTGAGCGTTATTGTAAATGCAACCCGAGTTCTTTCAGCAGTGCAGATACTGCCTATGTTCTTGCTTACTCTGTGATAATGCTTAATACAGATGCTCATAATAATATGGTGAAAGATAAGATGACGAAGGCTGACTTTATCCGAAACAACCGAGGAATAGATGATGGGAAAGATATACCGGAGGAATATCTTGGGGCCCTTTATGATCAAATTGTTAAAAACGAAATTAAGATGAATGCTAATTCTTCTGCACCTCAGAGTAAACAAGCAAATAGCTTTAATAGATTGCTGGGATTGGATGGTATACTCAATCTTGTGAACTGGAAGCAAAATGAGGAAAAAGCAGTGGGTGCAAATGGGCTTCTCATTCGGCACATTCAGGAGCAATTTAAATCAAATTCACGAAAATCAGAATCTATTTATCATGCTGTCACAGATGTGGCTATACTGAGGTTTATGGTGGAAGTCTGTTGGGGGCCTATGCTGGCTGCATTCAGTGTTACACTTGACCAGAGTGATGACAGNGTAGCTACATCTCAATGCTTACAGGGATTTCGACATGCCGTGCATGTTACTGCAGTGATGGGCATGCAGACTCAAAGGGATGCTTTTGTTACATCTGTTGCCAAATTTACCTATCTGCATTGTGCTGGTGATATGAAACAGAAAAATGTTGATGCTGTCAAGGCAATAATATCAATTGCCATTGAGGACGGTGATCATCTACAAGAAGCATGGGAACACATATTAACATGCCTCTCCCGAATTGAGCATTTGCAACTGTTAGGCGAGGGCGCCCCAAGTGATGCAACCTTCTTCACTTCATCTAATTTTGAAACAGAGGAAAAAACACCAAGAACATTAGGTTTCTCTTCTTTTAAGAAAGNAACTCTCCAAAATCCGGCCATGGCAGCTGTTGTTCGTGGTAGTTCATATGACAGTACAAGTGTNGGGGTCAACCCTTCTGCATTGGTAACACCAGAACAAATAAATAATTTCATTTCTAACTTGAATCTACTGGATCAGATTGGGAACTTTGAATTGAACCATGTGTTTGCTCATAGTCAACGGTTGAATGGTGAAGCAATAGTAGCATTTGTGAAAGCACTTTGTAAAATTTCCATCTCAGAGTTACAGTCTCCAACAGACCCCCGTGTATTCGGCCTCACTAAAATAGTAGAAATTGCGCATTATAATATGAGCCGCATCAGATTAGTGTGGTCTCGCATATGGAATGTTTTATCAGATTTCNTTGTGTCAGTTGGATTGTCAGAAAATCTGTCAGTTGCAATCTTTGCGATGGATTCACTGCGACAACTTGCGATGAAATTTTTGGAGCGTGAAGAGCTGGCTAATTATAACTTCCAGAATGAATTTCTGAGACCATTTGTGATTGTTATGCAGAAAAGCAACTCCACAGAAATTAGAGAATTAATAGTTCGTTGTATTTCACAGATGGTCCTTAGCCGTGTCAGTAANGTGAAATCTGGCTGGAAAAGTGTTTTTATGGTTTTTACAGCTGCTGCAGCTGATGAGCGAAAGAATATTGTATTGTTAGCATTTGAGACCATGGAGAAAATAGTGCGTGAATTTTTCCCTTATATTACTGAGACGGAAACAACGACCTTCACTGACTGTGTTCGATGCCTTTTGACATTTACAAATAGCCGATTCAATAGTGATGTGAGCCTCAATGCAATTGCATTTCTTCGTTTCTGTGCAGTCAGACTTGCTGATGGAGGACTTGTTTGCAATAAGAACAGTGTCAATGGCTCATCTGATGCAGTAGCAAATGGTGTTTCAGATGTACAAGCTCTTATTGATAACGATGACCATGTGTCCTTTTGGAATCCTTTGCTATCAGGT

Protein Sequence

>Glyur001477s00034096.1
MSASQSLGGPSRCGRVLGPSLDKIIKNAAWRKHSHLVSSCKSTLDKLESLSESESSSGDXQSPLLGLSSSDAEYVLQPLLLALDSAYAKVVEPALECTFKLFSLGLLCGEIDRPDKSTVGVVFNMIDSICKSGGLGEEAIELGVLRVLLSAXRSPCILIRADCLIQIVRTCYNVYLGGVNGTNQICAKSVLAQIMTIVFTRVEEDSMDVSVKRVSVSELLEFTDKNLNEGNSIHFCQNFINEVMEASEGVPLKPPSISPPLEVSNACAPLSKEVDETGTXKFHNEAGPDGSKIREDGFLLFKNLCKLSMKFSSQQHPDDRILLRGKILSLELLKVVMDNGSSLWRVNERFLNAIKQYLCLSLLKNSALSAMAIFQLQCSIFMNLLSKFRSGLKKEIGMFFPMLILRVLENVLQPSFLQKMTVLNLLDKISQDPQIIIDIFVNYDCDVDASNIFERIVNGLLKTALGPPTGSTTSLSPAQDITFRYESVKCLVSIIKSMGAWMDQQIRVGDLFIAKSPESSSVVESHLMLNGEEGNASDLELHPDVNSEFSDAATLEQRRAYKIELQKGITVFNRKPSKGIEFLISNKKIGSSPEEVALFLKNTGGLDETKIGDYLGEREDFSLKVMHAYVDSFNFKGMDFGEAIRFFLQGFRLPGEAQKIDRIMEKFAERYCKCNPSSFSSADTAYVLAYSVIMLNTDAHNNMVKDKMTKADFIRNNRGIDDGKDIPEEYLGALYDQIVKNEIKMNANSSAPQSKQANSFNRLLGLDGILNLVNWKQNEEKAVGANGLLIRHIQEQFKSNSRKSESIYHAVTDVAILRFMVEVCWGPMLAAFSVTLDQSDDXVATSQCLQGFRHAVHVTAVMGMQTQRDAFVTSVAKFTYLHCAGDMKQKNVDAVKAIISIAIEDGDHLQEAWEHILTCLSRIEHLQLLGEGAPSDATFFTSSNFETEEKTPRTLGFSSFKKXTLQNPAMAAVVRGSSYDSTSVGVNPSALVTPEQINNFISNLNLLDQIGNFELNHVFAHSQRLNGEAIVAFVKALCKISISELQSPTDPRVFGLTKIVEIAHYNMSRIRLVWSRIWNVLSDFXVSVGLSENLSVAIFAMDSLRQLAMKFLEREELANYNFQNEFLRPFVIVMQKSNSTEIRELIVRCISQMVLSRVSXVKSGWKSVFMVFTAAAADERKNIVLLAFETMEKIVREFFPYITETETTTFTDCVRCLLTFTNSRFNSDVSLNAIAFLRFCAVRLADGGLVCNKNSVNGSSDAVANGVSDVQALIDNDDHVSFWNPLLSG

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01477	17396	28744	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0032012 regulation of ARF protein signal transduction

molecular_function

GO:0005086 ARF guanyl-nucleotide exchange factor activity

GO:0005488 binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001477s00034096.1	PF12783.2	Sec7_N	292	453	7.70E-50
Glyur001477s00034096.1	PF01369.15	Sec7	560	743	5.00E-69
Glyur001477s00034096.1	PF09324.5	DUF1981	1109	1194	2.80E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.538
SRR1783600	control	10.526
SRR1783602	moderate drought stress	8.728
SRR1811619	moderate drought stress	8.839

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.828
DRR006520	Root Summer glycyrrhizin high producing strain	5.634
DRR006521	Root Winter glycyrrhizin high producing strain	4.147
DRR006522	Root Winter glycyrrhizin high producing strain	4.017
DRR006523	Root Summer glycyrrhizin low producing strain	6.747
DRR006524	Root Summer glycyrrhizin low producing strain	6.928
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.833
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.838

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.780
SRR2868004	Drought Stress (root)	18.121
SRR2967015	Control (root)	16.487

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.323
SRR9715740	Leaf	4.694
SRR9715741	Leaf	6.847
SRR9715739	Root	2.363
SRR9715742	Root	14.109
SRR9715743	Root	12.205

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.332
SRR8749028	MeJA induced 9h	14.266
SRR8749029	MeJA induced 9h	1.684
SRR8749030	Uninduced	3.137
SRR8749031	Uninduced	2.803
SRR8749032	Uninduced	0.684

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.466
SRR8400027	Control - Root	17.530