Gene detail information of Glyur001475s00040567.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G41920.1 | 6.00E-35 | Protein kinase superfamily protein |
| NR | KHN40490.1 | 3.06E-94 | MAP kinase kinase kinase mkh1 [Glycine soja] |
| COG | NP_441874.1 | 2.00E-16 | serine/threonine protein kinase [Synechocystis sp. PCC 6803] |
| Swissprot | tr|Q5JLS2|CIPKC_ORYSJ | 2.00E-14 | CBL-interacting protein kinase 12 |
| trEMBL | tr|I1N409|I1N409_SOYBN | 2.00E-94 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G47940.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01475 | 30786 | 31391 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:4.4.3 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001475s00040567.1 | PF00069.20 | Pkinase | 4 | 198 | 1.80E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.334 |
| SRR1783600 | control | 5.490 |
| SRR1783602 | moderate drought stress | 2.737 |
| SRR1811619 | moderate drought stress | 2.357 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.192 |
| SRR2868004 | Drought Stress (root) | 2.296 |
| SRR2967015 | Control (root) | 0.906 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.908 |
| SRR8749028 | MeJA induced 9h | 6.256 |
| SRR8749029 | MeJA induced 9h | 2.394 |
| SRR8749030 | Uninduced | 3.927 |
| SRR8749031 | Uninduced | 2.641 |
| SRR8749032 | Uninduced | 4.870 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.160 |
| SRR8400027 | Control - Root | 0.028 |