Gene detail information of Glyur001470s00040460 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G26540.1 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_007137504.1 | 0 | hypothetical protein PHAVU_009G132500g [Phaseolus vulgaris] |
| Swissprot | tr|Q9LRV2|PP256_ARATH | 0 | Pentatricopeptide repeat-containing protein At3g26540 |
| trEMBL | tr|V7AY05|V7AY05_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW09498.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01470 | 15434 | 17948 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001470s00040460.1 | PF13812.1 | PPR_3 | 86 | 111 | 0.25 |
| Glyur001470s00040460.1 | PF13041.1 | PPR_2 | 115 | 159 | 7.80E-10 |
| Glyur001470s00040460.1 | PF01535.15 | PPR | 215 | 241 | 0.0027 |
| Glyur001470s00040460.1 | PF01535.15 | PPR | 288 | 312 | 0.054 |
| Glyur001470s00040460.1 | PF01535.15 | PPR | 316 | 346 | 2.20E-07 |
| Glyur001470s00040460.1 | PF01535.15 | PPR | 347 | 373 | 0.023 |
| Glyur001470s00040460.1 | PF01535.15 | PPR | 420 | 443 | 0.034 |
| Glyur001470s00040460.1 | PF13041.1 | PPR_2 | 447 | 493 | 2.60E-08 |
| Glyur001470s00040460.1 | PF13041.1 | PPR_2 | 547 | 594 | 7.00E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.829 |
| SRR1783600 | control | 4.007 |
| SRR1783602 | moderate drought stress | 6.953 |
| SRR1811619 | moderate drought stress | 7.073 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.820 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.879 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.081 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.904 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.146 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.188 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.433 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.447 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.048 |
| SRR2868004 | Drought Stress (root) | 5.723 |
| SRR2967015 | Control (root) | 5.076 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.073 |
| SRR9715740 | Leaf | 0.913 |
| SRR9715741 | Leaf | 0.873 |
| SRR9715739 | Root | 0.615 |
| SRR9715742 | Root | 1.984 |
| SRR9715743 | Root | 2.172 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.489 |
| SRR8749028 | MeJA induced 9h | 3.125 |
| SRR8749029 | MeJA induced 9h | 1.668 |
| SRR8749030 | Uninduced | 0.396 |
| SRR8749031 | Uninduced | 0.331 |
| SRR8749032 | Uninduced | 0.344 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.112 |
| SRR8400027 | Control - Root | 8.596 |