Gene detail information of Glyur001469s00033481.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G08130.4 | 3.00E-102 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| NR | XP_004508645.1 | 0 | PREDICTED: transcription factor BIM1-like [Cicer arietinum] |
| Swissprot | tr|Q9LEZ3|BIM1_ARATH | 3.00E-125 | Transcription factor BIM1 |
| trEMBL | tr|A0A072USK3|A0A072USK3_MEDTR | 0 | Transcription factor BIM2-like protein {ECO:0000313|EMBL:KEH32063.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01469 | 13567 | 21183 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001469s00033481.1 | PF00010.21 | HLH | 266 | 319 | 1.80E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.966 |
| SRR1783600 | control | 13.835 |
| SRR1783602 | moderate drought stress | 13.382 |
| SRR1811619 | moderate drought stress | 13.195 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.997 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.775 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 25.238 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 24.653 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 41.709 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 41.189 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.290 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.413 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 36.409 |
| SRR2868004 | Drought Stress (root) | 43.838 |
| SRR2967015 | Control (root) | 47.536 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.566 |
| SRR9715740 | Leaf | 7.127 |
| SRR9715741 | Leaf | 8.050 |
| SRR9715739 | Root | 3.115 |
| SRR9715742 | Root | 20.040 |
| SRR9715743 | Root | 16.219 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.475 |
| SRR8749028 | MeJA induced 9h | 11.823 |
| SRR8749029 | MeJA induced 9h | 5.981 |
| SRR8749030 | Uninduced | 12.425 |
| SRR8749031 | Uninduced | 16.886 |
| SRR8749032 | Uninduced | 9.796 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 37.678 |
| SRR8400027 | Control - Root | 42.131 |