Gene detail information of Glyur001468s00039405 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G58000.1 | 9.00E-75 | Reticulon family protein |
| NR | XP_007138414.1 | 0 | hypothetical protein PHAVU_009G206800g [Phaseolus vulgaris] |
| Swissprot | tr|Q56X72|RTNLS_ARATH | 6.00E-86 | Reticulon-like protein B21 |
| trEMBL | tr|V7B0K5|V7B0K5_PHAVU | 0 | Reticulon-like protein {ECO:0000256|RuleBase:RU210713} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01468 | 3236 | 12745 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001468s00039405.1 | PF02453.12 | Reticulon | 459 | 544 | 4.70E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 22.634 |
| SRR1783600 | control | 22.422 |
| SRR1783602 | moderate drought stress | 25.110 |
| SRR1811619 | moderate drought stress | 25.119 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 35.397 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 34.564 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.231 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.976 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 27.918 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 28.637 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.632 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.600 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 30.133 |
| SRR2868004 | Drought Stress (root) | 30.530 |
| SRR2967015 | Control (root) | 43.248 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.137 |
| SRR9715740 | Leaf | 2.085 |
| SRR9715741 | Leaf | 3.365 |
| SRR9715739 | Root | 2.790 |
| SRR9715742 | Root | 16.573 |
| SRR9715743 | Root | 14.569 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.972 |
| SRR8749028 | MeJA induced 9h | 8.661 |
| SRR8749029 | MeJA induced 9h | 2.475 |
| SRR8749030 | Uninduced | 0.801 |
| SRR8749031 | Uninduced | 0.141 |
| SRR8749032 | Uninduced | 0.606 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 47.245 |
| SRR8400027 | Control - Root | 57.355 |