Gene detail information of Glyur001467s00033957 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G59500.1 | 2.00E-51 | Integral membrane HRF1 family protein |
| NR | AES77833.2 | 8.39E-88 | integral membrane HRF1 family protein [Medicago truncatula] |
| trEMBL | tr|G7KSU9|G7KSU9_MEDTR | 3.00E-88 | Integral membrane HRF1 family protein {ECO:0000313|EMBL:AES77833.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01467 | 1857 | 4409 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001467s00033957.1 | PF03878.10 | YIF1 | 44 | 148 | 1.20E-40 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.009 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.689 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.665 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.848 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.919 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 29.338 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 22.803 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.631 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.655 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.270 |
| SRR2868004 | Drought Stress (root) | 19.844 |
| SRR2967015 | Control (root) | 17.198 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 18.939 |
| SRR8749028 | MeJA induced 9h | 19.278 |
| SRR8749029 | MeJA induced 9h | 22.865 |
| SRR8749030 | Uninduced | 19.791 |
| SRR8749031 | Uninduced | 22.705 |
| SRR8749032 | Uninduced | 23.644 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.084 |
| SRR8400027 | Control - Root | 0.059 |