Gene detail information of Glyur001463s00032092 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G39830.1 | 9.00E-62 | Cupredoxin superfamily protein |
| NR | XP_007159725.1 | 8.60E-99 | hypothetical protein PHAVU_002G262200g [Phaseolus vulgaris] |
| COG | YP_007151571.1 | 6.00E-21 | copper-resistance protein, CopA family [Stanieria cyanosphaera PCC 7437] |
| Swissprot | tr|P24792|ASO_CUCMA | 2.00E-53 | L-ascorbate oxidase (Precursor) |
| trEMBL | tr|V7CNL8|V7CNL8_PHAVU | 3.00E-99 | Uncharacterized protein {ECO:0000313|EMBL:ESW31719.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01463 | 62012 | 62890 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001463s00032092.1 | PF07732.10 | Cu-oxidase_3 | 42 | 109 | 4.50E-21 |
| Glyur001463s00032092.1 | PF07732.10 | Cu-oxidase_3 | 110 | 136 | 7.50E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.181 |
| SRR1783600 | control | 0.142 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.070 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.037 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.894 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.484 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.529 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.015 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.999 |
| SRR2868004 | Drought Stress (root) | 30.475 |
| SRR2967015 | Control (root) | 31.536 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 82.545 |
| SRR9715740 | Leaf | 68.589 |
| SRR9715741 | Leaf | 113.207 |
| SRR9715739 | Root | 7.124 |
| SRR9715742 | Root | 31.984 |
| SRR9715743 | Root | 24.766 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.368 |
| SRR8749028 | MeJA induced 9h | 7.115 |
| SRR8749029 | MeJA induced 9h | 2.993 |
| SRR8749030 | Uninduced | 44.132 |
| SRR8749031 | Uninduced | 6.864 |
| SRR8749032 | Uninduced | 1.524 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.698 |
| SRR8400027 | Control - Root | 13.153 |