Gene detail

Gene detail information of Glyur001463s00032087

Functional Annotation

Database	Orthologs	E value	Annotation
NR	XP_003524272.1	0	PREDICTED: probable glucan 1,3-beta-glucosidase A-like [Glycine max]
COG	YP_004515180.1	2.00E-39	glucan 1,3-beta-glucosidase [Methylomonas methanica MC09]
trEMBL	tr\|I1K4L7\|I1K4L7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G31460.1}

Sequence

Transcript Sequence

>Glyur001463s00032087.1
AAAGTACAGGTGATAAATATGAAGTTACCAACATCATTCATGACATAACTAATCAAAGATTTAATTATCACGTCATTGTACAAATTCCTTTCTTACCGAAGAAGCAAATTTTCTTTGCTTAGTCGATATACTAGAAATGCATAACAAGTAGCTTATTATAGAAATGCAGTGCACCTGATATTCAAGAAAAATCTAGGCAAAGATAATAGCCCAGAGCTTGTTGATATCACTGTGCTTGATATTTCTAGTTCTAGACGGTGGAGTGTGGACCCTATATATATTACATACACAATCCTCATGCGTAGCACTCACTCCACACGCTCGGAGTGTAATAAGATGTGCAACAAATTCTTCTATGCGAGCCTTCTGTTCGCTTTCTACCTCTCATGTCACTATGTTTCTGTTGCTGCTGCTCAGACCCAAAATTACTCCACTTTGTTGCCACTCAAAGCTGTGAACCTTGGAAATTGGCTCGTCATTGAAGGGTGGATGAAACCTTCTCTCTTTGAAGGAATAACCAACAAAGATCTTTTGGATGGAACTCAAGTGCAATTCATGTCTATGAAGTTGCAGAAGTATCTCTGTGCAGAACAAGGGGGAGGAACTATTGTTGTTGCCAACAGAACCAAAGCTTCGGGTTGGGAAACTTTCAGGTTGTGGAGGGTCAATGAAACGGCCTTCAATTTTAGAGTGTCTAATAAGCAATTTGTGGGATTGGAAGATGAAGGTGGGGGAAACAAATTAGTGGCTGATTCANATTCACCCGGCAACAAGGAAACATTTCAGATTCTGAGAAGTGACTATGATCCAAACAGGGTTCGCATCAGAGCACCAAATGGTCTGTTTTTACAGGCCATATCAGAGACTCTAGTGANTGCAGATTATGAAGGGTCCAGTTGGGAGGATAGTGACCCTTCTGTCTTCAAAATGACTGATCACTGGAAAACGTATATAACTGAAGAGGATTTCAAATTCATGTCAGAAAATGGCTTAAATGCTGTCAGAATTCCCGTTGGGTGGTGGATAGCTCATGACCCAACACCACCAAAGCCATTTGTTGAAGGGTCCTTGAAAACACTTGACAATGCCTTCACATGGGCACAAAAGTATGGAATGAAGGTAATTGTGGANCTGCACGCTGTTCCGGGTTCACAAAATGGAAGAGCTCATAGTGCCTCAAGGGATGGATATCGAGAATGGGGAGATTCTTACATATCTGACACTGTGGAAACCATAGACTTCCTAGCTAAAAGATATGCGGACAGACCAAGTCTGATTGCAATAGAGCTCATGAATGAGCCTCAAGGTGTGAATCTAGAAAGCCTTAAGAGGTATTATCAAGAGGGTTATGAAGCTGTACGGAGACACACGTCNAGTGCTTATGTGATCATGTCTAACCCTCTTGATAGAGATTCAAAAGTGCTTCTGCCGTTTGCCGGGGCCTTCAGTGGGGTAGTCATTGATGTGCATTACTACAACCTCTTTTCGAATCAGTTCTCCACCATGAATGTGCAGCAGAACATTGATTACATTAAACATCACAGAGCCCCAGAGCTTAGCTCTCTGACCAAATCTAATGGACCCCTCATCTTTGTTGGGGAGTGGAGTGGTGANTGGAATGTTAGGAAGGCATCAGAGAAAGATTACCAAAAATTTGCACAGGTGCAAGTGGAGGTGTACTCTCGTGCCACATTTGGATGGGCTTATTGGGCGTACATATGTGACTCTAATTACTGGAACCTCAAGTGGATGCTTGAAAATAATTATGTGAAGCTTTAATTTGCCCCTCAGGCCTCAACCATGCTCTAAGAGTCTCTGGGGGTACTTATTTTATAATTATTATATATATAATATATGTAATATGGAATCCTGTCAAGTGTAATTTACAAAAAATAAGATAACACTACCGATATATATATGTATGTTTGTATATATAGCCTACAAACACGCTATCACTTCATCTGTTAGTAGTTAATGCACTGAATGAAGATGCAACTTTTGATTCTGTCTTTTACCTCTTCAATCTTAAATTAATAGTGGTACGTTTGGATNGGTGAAATTGTTGGATTGTATTGTAATGTATTCCAAAAGTTTCATATTTGACTGGAGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01463	23201	26542	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0005975 carbohydrate metabolic process

GO:0007015 actin filament organization

molecular_function

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0051015 actin filament binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001463s00032087.1	PF00150.13	Cellulase	208	473	3.20E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	29.913
SRR1783600	control	30.005
SRR1783602	moderate drought stress	16.031
SRR1811619	moderate drought stress	15.680

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	71.401
DRR006520	Root Summer glycyrrhizin high producing strain	70.261
DRR006521	Root Winter glycyrrhizin high producing strain	11.088
DRR006522	Root Winter glycyrrhizin high producing strain	10.313
DRR006523	Root Summer glycyrrhizin low producing strain	33.621
DRR006524	Root Summer glycyrrhizin low producing strain	33.740
DRR006525	Leaf Summer glycyrrhizin high producing strain	49.800
DRR006526	Leaf Summer glycyrrhizin high producing strain	49.506

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.859
SRR2868004	Drought Stress (root)	18.581
SRR2967015	Control (root)	42.664

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.675
SRR9715740	Leaf	1.513
SRR9715741	Leaf	1.992
SRR9715739	Root	3.053
SRR9715742	Root	20.667
SRR9715743	Root	18.157

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.253
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.041
SRR8749030	Uninduced	0.030
SRR8749031	Uninduced	0.036
SRR8749032	Uninduced	0.027

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	79.752
SRR8400027	Control - Root	88.539