Gene detail information of Glyur001456s00029804.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G52520.1 | 3.00E-44 | FAR1-related sequence 6 |
| NR | KHG04174.1 | 2.20E-122 | far1-related sequence 6 -like protein [Gossypium arboreum] |
| Swissprot | tr|Q9SSQ4|FRS6_ARATH | 1.00E-48 | Protein FAR1-RELATED SEQUENCE 6 |
| trEMBL | tr|A0A0A0K8R3|A0A0A0K8R3_CUCSA | 2.00E-101 | Uncharacterized protein {ECO:0000313|EMBL:KGN45259.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01456 | 9337 | 11388 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | FAR1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001456s00029804.1 | PF03101.10 | FAR1 | 64 | 147 | 9.30E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.077 |
| SRR1783600 | control | 2.314 |
| SRR1783602 | moderate drought stress | 2.855 |
| SRR1811619 | moderate drought stress | 3.113 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.390 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.108 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.299 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.235 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.083 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.894 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.694 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.513 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.671 |
| SRR2868004 | Drought Stress (root) | 4.320 |
| SRR2967015 | Control (root) | 4.985 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.078 |
| SRR9715740 | Leaf | 0.970 |
| SRR9715741 | Leaf | 0.721 |
| SRR9715739 | Root | 0.124 |
| SRR9715742 | Root | 0.758 |
| SRR9715743 | Root | 0.670 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.164 |
| SRR8749028 | MeJA induced 9h | 3.526 |
| SRR8749029 | MeJA induced 9h | 0.977 |
| SRR8749030 | Uninduced | 1.487 |
| SRR8749031 | Uninduced | 2.240 |
| SRR8749032 | Uninduced | 1.664 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.221 |
| SRR8400027 | Control - Root | 3.258 |