Gene detail

Gene detail information of Glyur001455s00037991.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G22070.1	3.00E-81	TGA1A-related gene 3
NR	XP_007141120.1	1.02E-160	hypothetical protein PHAVU_008G169000g [Phaseolus vulgaris]
Swissprot	tr\|Q39234\|TGA3_ARATH	8.00E-99	Transcription factor TGA3
trEMBL	tr\|I1MAP0\|I1MAP0_SOYBN	1.00E-161	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G33800.4}

Sequence

Transcript Sequence

>Glyur001455s00037991.1
GAAATGCATCATATCAAGTGTTGCTTATAAGTGGCATCAAATATTTATGTTCTTTTATTATTATTAATATAGTTATTTTTGGAAAAATATCTTTTTTTGGGTTGATCCTAGAGACAAGAGAACATTAATCATGTGCAAACTTCTCCATATATGTCACTGTTTTCTGATTCTGATGTTGAGTATATGAGTTCTTCATCAACTCAACTAGTCATCGCCAAAAGGATGGNCATATATGAGCCGTTCCATCAAGTGAGCATGTGAGAGGACAGCTTTAAAGTTGATGGAAGCCTGAATTCAATTGCTTCCCCAATGTTGATGATGAACAGTAGCATCATCGAGAACAAGTCTGAGTGTACTCCTCATGAATCAAGGGAACCTTCTGGTGATTATCAAGAGACTACTGACAAAGCTGTTACTAAGGTGTTAAGACGTCTAGCCCAAAATCGCGAGGCTGCTCGGAAATGCCGGCTGCGGAAGAAGGCTTATGTTCAACAATTGGAAACAAGCCGGTTGAAGCTCATGCAGCTGGAACTGGAGATTGAGAAAACAAAAAAGCAGGGTCCATACATTGGCAGTTCATTAGATGTCAGTTATATGGGATCATCTGGAACAGTAAACTCAGGGATATCTGTGTTTGAAATTGAATATGGGCGATGGGTTGAAGAGCAGGATAGACAGAATGAAGAACTAAGAAATGCATTGCAATCTCATGCATCTGATATACAGCTTCATCTACTTGTTGAGAGTAGTTTGAACCACTACTCAAATCTTTTCAGGATGAAAGCAGATGCTGCAAAGGCCGATGTCTTTTACTTAATTTCGGGTGCGTGGAAAGCATCGGTAGAACGCCTTTTTCTTTGGATTGGAGGATCCCGTCCATCCCAGCTTCTAAATATCATCGTACCCCAGCTTGAGCCTTTGAGTGATGAACAGATTGTGAGCATTAACAANCTCCGCCTATCCTCCCAGCAAGCGGAAGATGCACTTTCAGTGGGGTTGGAGAAACTCCAACAGAGTCTGGTCCACAACATACAAGCTGATCCCTTGGTTGTTGGAAACTATGGTCTTCAGATGGCTGCTGCAATGGACAAAGGTGAAGCACTAGAAGGTTTTGTAAACCAGGACATATGTGAAAGTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01455	16837	21543	-

Gene family

Gene family	subfamily
Transcription Factors Family	bZIP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006351 transcription, DNA-templated

GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001455s00037991.1	PF00170.16	bZIP_1	37	66	2.00E-10
Glyur001455s00037991.1	PF14144.1	DOG1	123	200	3.70E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	22.607
SRR1783600	control	21.901
SRR1783602	moderate drought stress	38.251
SRR1811619	moderate drought stress	36.946

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	26.672
DRR006520	Root Summer glycyrrhizin high producing strain	25.698
DRR006521	Root Winter glycyrrhizin high producing strain	7.879
DRR006522	Root Winter glycyrrhizin high producing strain	7.896
DRR006523	Root Summer glycyrrhizin low producing strain	53.031
DRR006524	Root Summer glycyrrhizin low producing strain	51.418
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.429
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.428

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.048
SRR2868004	Drought Stress (root)	23.306
SRR2967015	Control (root)	34.325

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.606
SRR9715740	Leaf	10.838
SRR9715741	Leaf	10.925
SRR9715739	Root	5.079
SRR9715742	Root	20.594
SRR9715743	Root	15.228

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.166
SRR8749028	MeJA induced 9h	44.033
SRR8749029	MeJA induced 9h	11.789
SRR8749030	Uninduced	37.845
SRR8749031	Uninduced	10.828
SRR8749032	Uninduced	10.817

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	25.815
SRR8400027	Control - Root	24.803