Gene detail information of Glyur001454s00043722 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G01370.1 | 2.00E-07 | ALC-interacting protein 1 |
| NR | XP_007134791.1 | 4.70E-121 | hypothetical protein PHAVU_010G076500g [Phaseolus vulgaris] |
| trEMBL | tr|V7ANB3|V7ANB3_PHAVU | 2.00E-121 | Uncharacterized protein {ECO:0000313|EMBL:ESW06785.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01454 | 57958 | 59914 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001454s00043722.1 | PF14383.1 | VARLMGL | 71 | 88 | 1.90E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.184 |
| SRR1783600 | control | 2.250 |
| SRR1783602 | moderate drought stress | 0.596 |
| SRR1811619 | moderate drought stress | 0.562 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.399 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.179 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.160 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.781 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.949 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.943 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.203 |
| SRR2868004 | Drought Stress (root) | 3.753 |
| SRR2967015 | Control (root) | 2.311 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.543 |
| SRR9715740 | Leaf | 5.057 |
| SRR9715741 | Leaf | 13.169 |
| SRR9715739 | Root | 4.860 |
| SRR9715742 | Root | 3.236 |
| SRR9715743 | Root | 2.918 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.639 |
| SRR8749028 | MeJA induced 9h | 4.720 |
| SRR8749029 | MeJA induced 9h | 8.255 |
| SRR8749030 | Uninduced | 3.957 |
| SRR8749031 | Uninduced | 0.485 |
| SRR8749032 | Uninduced | 0.441 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.028 |
| SRR8400027 | Control - Root | 4.447 |