Gene detail

Gene detail information of Glyur001449s00039208

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G58130.1	1.00E-12	RNA-binding (RRM/RBD/RNP motifs) family protein
NR	XP_003595491.1	2.24E-123	hypothetical protein MTR_2g048340 [Medicago truncatula]
trEMBL	tr\|A2Q361\|A2Q361_MEDTR	8.00E-124	RNA-binding region RNP-1 (RNA recognition motif); Pyridoxal-dependent decarboxylase {ECO:0000313\|EMBL:ABN08061.1}

Sequence

Transcript Sequence

>Glyur001449s00039208.1
ATGCTTCAAGTGCAGAAAAAGGGCAACAGTGATCCTAACAATGTCAAGAAGACAAAATCACCTCCCAAATTGGAAGGCAAAAGCAATGGGGGTGTCTCTAGTTCCCCTGGAGGCAAGAGTATAATGCAGACCCTTCCAGATGAGCCGGGATCTGGTTCACAGCCTACTAAACTAGAACACGATTTTGGGGAATCTACTAAAGTTTCATGGTCTCAGAAGTCCTCATGGAAAAAACTTGTTGGTGAAGGAGGCAACACTGCTTTCAGTGCCTCTCTCATATTGCCAAACTTTGATTCTGGTAAAGATCAACAAAGATCCGATGGTCCTTGCACACCATTGTCTACAAACGACGGCAAAACTGAAAACATGGAAAGGGATGGAAAACCAGGGAGCAAACCTACCAATACAGAAGTCATAGAAGAGCCTGCTGAAGCCCATCCTACAAAAAACCAAGTGATAAAAGTGCCTGCTGAAGCTCAACCTACCAATAACCAAGTGATAAACGAGGATGCCGAAACTCAGGACAATGCAGCACCGAAAAGGACCGGCAGAGGTGCTTCATGGCTGCGAAAGCAATCCTGGACCCAACTGGTTAATGAGAATAACAGTTCATTTAGCATCTCACAGATTTTGCCTGGCATTACTTTCTCAGAGGCAACGACCAAGGAGACCATATTAGACCCTGCCGACTCCAATGATTGCATCCATAATGGAGTAGATCAGAATACTACTGATGGAGTAGTTGTCACTGATGGCTCTAACCTAGGGGATAGTCGGCATGCCGGTGCCGATGATATTGCTTCTGCTTCCGTGGTTGAGGAAAAAATTGAAACAAGTACAAGGGAAAGATCCACTGCAGATGTTGTTGAAATAGGCGAAACTTGCTCGTTTATGAGAAGTGCTGCTTCTTTGAAAGAGTGGGCAAAAGCCAAGGCTGCTGTTAGTGGTTCACTCAAAAGAAAACGTGGTGAGAAGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01449	54956	55933	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.919
SRR1783600	control	10.378
SRR1783602	moderate drought stress	15.391
SRR1811619	moderate drought stress	15.169

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	25.915
DRR006520	Root Summer glycyrrhizin high producing strain	25.010
DRR006521	Root Winter glycyrrhizin high producing strain	26.063
DRR006522	Root Winter glycyrrhizin high producing strain	25.361
DRR006523	Root Summer glycyrrhizin low producing strain	20.907
DRR006524	Root Summer glycyrrhizin low producing strain	20.341
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.666
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.053

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.297
SRR2868004	Drought Stress (root)	13.247
SRR2967015	Control (root)	13.020

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.189
SRR9715740	Leaf	9.175
SRR9715741	Leaf	9.398
SRR9715739	Root	1.797
SRR9715742	Root	8.600
SRR9715743	Root	9.660

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	50.585
SRR8749028	MeJA induced 9h	24.759
SRR8749029	MeJA induced 9h	36.028
SRR8749030	Uninduced	15.005
SRR8749031	Uninduced	11.705
SRR8749032	Uninduced	13.807

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.440
SRR8400027	Control - Root	10.310