Gene detail

Gene detail information of Glyur001447s00040317

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G18360.1	4.00E-41	Disease resistance protein (TIR-NBS-LRR class) family
NR	KEH34063.1	2.99E-95	disease resistance protein (TIR-NBS-LRR class) [Medicago truncatula]
COG	YP_003383338.1	3.00E-08	XRE family transcriptional regulator [Kribbella flavida DSM 17836]
Swissprot	tr\|O82500\|Y4117_ARATH	8.00E-36	Putative disease resistance protein At4g11170
trEMBL	tr\|A0A072UY76\|A0A072UY76_MEDTR	1.00E-95	Disease resistance protein (TIR-NBS-LRR class) {ECO:0000313\|EMBL:KEH34063.1}

Sequence

Transcript Sequence

>Glyur001447s00040317.1
ACTGAAGCTGACTTAATCAAGGACATTATCAAAGATGTTTTGCAAAAACAAAATCGTAGATGCCCACGTGAAGTCAAGGGACTTGTTGGAATTGAGAAAAATCTTGAACAAATTGAATCATTGCTGAATATTGGGTCAAATGATGTTAAAATCCTTGGAATATGGGGCATGGGTGGCATGGGTAAGACCACCCTTGCCACTGCATTTTATGCTAAACATAAATCCCAATTTGAAGGTGATTGCTTCCTCCCAAATGTAAGGGAAGAATCAGACAAGTCTGGAGTCAATGCTTTACAGAACAGACTTTTTTCTGAGTTGTTAGAGGAAGAAAATCTTCGTCTTGGTGCGCCCAAAATAGAAACCCCTTTCTTAAGAAGGCTTGAGGGCAAAAAAGTTTTAGTTGTGTTGGATGATGTGGCAACCTCAAAGCAAATAGAAGATCTTATGATAAACAATAATAACTTGGGGTTGGGTAGTAGAGTCATTGTTACAACTAGAGTTAAGCAAGTATTTAGCCAATTGGATGAGTGTGAAATATACGAGGTCAAGGAATTGGATGGACATGACTCTCACATGCACGATTTGATGCGAGAAATGGGACGAGAGATTGTTAATCAAGAATCTAAATTCCCTGGAAAACGAAGCCGATTATGGAAACCCGAAGAAGTGCGTGATGTATTGAAAAATAAAAAGGGAACTGAAGAAGTTGAAGGCATAACATTCAATACTGCAAAAATTAGGGAACTGTATCTAAGCCCTGAGTCCTTTAAAGGGATGACTGAGTTGAGATATCTTAATATCCATAATTCTTTCACTAGCACTGATAGCAGTTTCTGCAATGTTTATATCCCTGATGGTCTTGAGTGTTTGTCTGATAAATTGAGGTATCTCCATTGGCAAGCATTCAGTTTTGAGTCTTTGCCACCAAACTTTTGTGCTGAAATGCTCGTAGTGCTTAGCATGCCTCATAGCAAACTTAAAAAGCTTTGGGACGGAGTTCAGGATCTTGCAAATTTAAAGGAAATTTTTCTTGATTCCTCCAAGGATCTCATCGAGACCCCAGACTTATCTAGGGCCCTAAATCTAGAAAGAGTATCTCTTCGTTATTGTGAAAGCTTATGTCAGCTCCACCCGTCCATTTTAACTCTCGACAAGCTTACGAATCTAGATTTAGGAGGCAGCAGAAAGATGTTGGAAAAATTAACAGCGCTAGATTGAGACCTGCGCCCTACATGGGTGTTGAACTTATTTATTTATGTTGTTTATATTTGAGATTTATATACTAAGTGTTATAAATATAATAATATAAAAATTTGAACTACTGAGTTGTATGTTAATATAAAAGCACAAATAAGGTCTTCTTTTTGGAAAGAAATATATTGAGGCAATCATCGATCTTATACTCTTGTGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01447	43937	45998	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001447s00040317.1	PF00931.17	NB-ARC	32	190	1.30E-24
Glyur001447s00040317.1	PF07725.7	LRR_3	316	334	3.30E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	46.133
SRR1783600	control	46.130
SRR1783602	moderate drought stress	36.375
SRR1811619	moderate drought stress	36.499

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.047
DRR006520	Root Summer glycyrrhizin high producing strain	7.625
DRR006521	Root Winter glycyrrhizin high producing strain	0.395
DRR006522	Root Winter glycyrrhizin high producing strain	0.316
DRR006523	Root Summer glycyrrhizin low producing strain	28.865
DRR006524	Root Summer glycyrrhizin low producing strain	29.177
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.122
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.065

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.631
SRR2868004	Drought Stress (root)	10.592
SRR2967015	Control (root)	2.350

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.741
SRR9715740	Leaf	11.796
SRR9715741	Leaf	23.513
SRR9715739	Root	2.672
SRR9715742	Root	25.516
SRR9715743	Root	23.546

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	55.390
SRR8749028	MeJA induced 9h	65.241
SRR8749029	MeJA induced 9h	80.365
SRR8749030	Uninduced	102.174
SRR8749031	Uninduced	96.755
SRR8749032	Uninduced	77.141

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	38.731
SRR8400027	Control - Root	39.888