Gene detail

Gene detail information of Glyur001445s00037293.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G45220.1	0	Plant invertase/pectin methylesterase inhibitor superfamily
NR	KEH29125.1	0	pectinesterase/pectinesterase inhibitor [Medicago truncatula]
COG	YP_006407803.1	3.00E-57	pectin methylesterase [Belliella baltica DSM 15883]
Swissprot	tr\|O04887\|PME2_CITSI	0	Pectinesterase 2 (Precursor)
trEMBL	tr\|A0A072UTA7\|A0A072UTA7_MEDTR	0	Pectinesterase {ECO:0000256\|RuleBase:RU000589}

Sequence

Transcript Sequence

>Glyur001445s00037293.1
CTCAAATTAAAACCCTTCTCTAAATTCTTAGCCTATAGCCAAAATNATTTTCGGCCATAGTACTCTCCTTATACTATGGCATCATTTCGTTTGTTAACAACGCTTCTAATAGTTCCCTTTCTATTAATATTCTCCTTATCTAGTACTCATGTTTCCGGTTACAATTCGAGTTTCATCAAATCATGGTGTAGCCAAACCCCATACCCACAACCATGTGAGTACTATTTGAGCAACAACAACGCTTTCAACAAACCCATAAAATCNAAGTCCGATTTCTACAAAGTGTCCCTTCAACTCGCCCTAGAGAGAGCAAAAAATGGAGAACAAAGCACACACTCACTAGGCCCAAAGTGCCGTAACGCACACGAAAAAGCCGCATGGGCCGATTGCACTGAACTCTATGAGTACACAATCCAAAGGCTCAATAAAACCATGGGTGCAAAGTGCACCCAAACCGAAGCACAAACATGGCTAAGCACCGCACTCACTAACCTTGAAACATGTAGGGATGGTTTCTATGACCTTGGTGTACAAAACTATGTTTTACCCTTGATGTCAAATAATGTCACAAAGTTGTTAAGCAACACCTTGTCTTTAAACAAGGTTAATAACAACCAACCACCACCACAAAGTTACAAAGGTGGGTTCCCAACATGGGTTAAACCTGGTGATAGGAAATTGCTCCAAACATCCTCGGCGGCTTCTAAGGCTAATGTGGTCGTTGCTAAAGATGGGTCTGGGAAATACACGACGGTTAAGGCTGCTGTAGATGCTGCACCAAAGAGTAGCAGTGGGAGGTATGTGATATATGTGAAGGCTGGTGTGTACAATGAACAAGTTGAGGTCAAGGCTAAGAATATCATGTTGGTGGGAGATGGTATTGGGAAGACCGTAATCACTGGTAGCAAAAGCGTTGGAGGTGGCACCACAACCTTCCGTTCAGCCACTGTTGCTGCTGTTGGCGATGGATTCATTGCTCAAGACATCACATTCAGAAACACTGCTGGAGCAGCAAATCACCAAGCCGTGGCACTACGATCTGGCTCAGATCTATCAGTATTTTACAGATGTAGCTTTGAAGGCTATCAAGACACACTATATGTTCATTCAGAGAGGCAATTTTACAGGGATTGTAACATCTATGGCACAGTCGACTTCATCTTTGGTAACGCCGCCGTGGTTTTGCAAAACTGCAACATCTTCGCAAGAAACCCTCCCCAGAAAACCATTACAGTCACTGCTCAAGGCCGAACCGATCCAAACCAAAACACCGGAATAGTCATCCACAATTCTAAGGTCACGGGTGCCTCGGATTTTAACCCAAGCTCCGTTAAGGCATATCTTGGGAGGCCTTGGCAAAAGTACTCAAGAACGGTTTTCATGAAAACTTCCCTTGACAGTTTTATAAACCCAGCTGGTTGGATGGAATGGGATGGCAATTTTGCTTTGGATACTTTGTACTATGCAGAATATGCTAACACTGGTTCAGGTGCCTCCACAGCCAAAAGGGTCACATGGAAAGGTTACCATGTTCTTACTAGTGCATCTCAGGCCTCACCTTTCACAGTTGGGAATTTCATTGCTGGTAACTCATGGTTACCTGGCACTGGTGTCCCTTTCACCTCTGGGCTTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01445	13871	17412	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CE8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01051	E3.1.1.11	EC:3.1.1.11	Pentose and glucuronate interconversions	map00040

Gene Ontology

biological_process
GO:0042545 cell wall modification

cellular_component
GO:0005618 cell wall

molecular_function

GO:0004857 enzyme inhibitor activity

GO:0030599 pectinesterase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001445s00037293.1	PF04043.10	PMEI	30	174	4.00E-27
Glyur001445s00037293.1	PF01095.14	Pectinesterase	213	505	5.80E-141

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.367
SRR1783600	control	2.460
SRR1783602	moderate drought stress	3.342
SRR1811619	moderate drought stress	3.441

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.067
DRR006522	Root Winter glycyrrhizin high producing strain	0.066
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.953
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.032

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	112.552
SRR2868004	Drought Stress (root)	112.542
SRR2967015	Control (root)	82.455

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.944
SRR9715740	Leaf	11.696
SRR9715741	Leaf	15.067
SRR9715739	Root	2.050
SRR9715742	Root	0.891
SRR9715743	Root	1.348

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	26.698
SRR8749028	MeJA induced 9h	579.806
SRR8749029	MeJA induced 9h	157.763
SRR8749030	Uninduced	1782.428
SRR8749031	Uninduced	3097.372
SRR8749032	Uninduced	1416.153

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.991
SRR8400027	Control - Root	10.261