Gene detail information of Glyur001441s00033225 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G27170.1 | 1.00E-52 | transmembrane receptors;ATP binding |
| NR | XP_004489498.1 | 0 | PREDICTED: uncharacterized protein LOC101494533 [Cicer arietinum] |
| COG | YP_001914303.1 | 3.00E-06 | leucin rich protein [Xanthomonas oryzae pv. oryzae PXO99A] |
| Swissprot | tr|Q40392|TMVRN_NICGU | 2.00E-56 | TMV resistance protein N |
| trEMBL | tr|A0A072UH08|A0A072UH08_MEDTR | 0 | Disease resistance protein (TIR-NBS-LRR class) {ECO:0000313|EMBL:KEH25085.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01441 | 29615 | 69320 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001441s00033225.1 | PF01582.15 | TIR | 613 | 749 | 4.90E-37 |
| Glyur001441s00033225.1 | PF00931.17 | NB-ARC | 795 | 855 | 9.50E-09 |
| Glyur001441s00033225.1 | PF00931.17 | NB-ARC | 1419 | 1486 | 3.80E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.584 |
| SRR1783600 | control | 3.623 |
| SRR1783602 | moderate drought stress | 3.346 |
| SRR1811619 | moderate drought stress | 3.034 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.838 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.997 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.631 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.675 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.459 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.275 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.396 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.399 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.348 |
| SRR2868004 | Drought Stress (root) | 1.897 |
| SRR2967015 | Control (root) | 2.121 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.604 |
| SRR9715740 | Leaf | 1.000 |
| SRR9715741 | Leaf | 1.572 |
| SRR9715739 | Root | 0.145 |
| SRR9715742 | Root | 1.008 |
| SRR9715743 | Root | 0.932 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.494 |
| SRR8749028 | MeJA induced 9h | 0.328 |
| SRR8749029 | MeJA induced 9h | 0.235 |
| SRR8749030 | Uninduced | 0.091 |
| SRR8749031 | Uninduced | 0.067 |
| SRR8749032 | Uninduced | 0.597 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.293 |
| SRR8400027 | Control - Root | 3.942 |