Gene detail

Gene detail information of Glyur001440s00032388.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G52940.1	1.00E-143	Ergosterol biosynthesis ERG4/ERG24 family
NR	XP_004497600.1	0	PREDICTED: delta(14)-sterol reductase-like [Cicer arietinum]
COG	YP_004916595.1	4.00E-88	delta(14)-sterol reductase [Methylomicrobium alcaliphilum 20Z]
Swissprot	tr\|Q9LDR4\|ERG24_ARATH	0	Delta(14)-sterol reductase
trEMBL	tr\|V7BHD4\|V7BHD4_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW17252.1}

Sequence

Transcript Sequence

>Glyur001440s00032388.2
TTTACACAGAAAAAACAGAGACTTGGGAGAGAGCATCGCCATGTCAATTTTCAGCAGCCGCAGAGAGACAGAGTGGAAGTAACAGCATATCTTAGCATCCCCAACCTGATATTCATATCAAAGTCACACTATCTTCTACTCACTCGAGACTGATTGATAGGGTCACACATGGATCTGGNTTTTCTGCTTCACGCTCTCGTTCCNTCTTGGAACTCCGCTTCTTTACTCGCGGGGTTCTTCNCTTACTTGGCCATTGCTGGATCCATTGTCCCTGGAAAACTTGTTCCTGGGGTTGTTCTCCCCGATTCTACTCGTCTTCACTATCGCTGCAATGGATTGCTCTCGCTTCTTCTGTTGGTTGCACTTANTGGGATCAGTTCCAAGATGGGTTTTGTATCTCCTACAGCCATAGCAGATAGAGGACTTGAGCTGCTGTCNACAACTTTTATCTTCAGTTTTCTTGTATGCCAGTCTAAATTGAATTTTAATTTGCTTGTTTGTCGTATCAAAGGTTTACAANGGGTTACATGGACGTATCTTGTTGCAGAGGTGACCCTGGTACTATATTTTTCCGGTTGCAAGTCACAAAGTAAAGGTTCATCGCTAAAACCTCATGTCAGTGGAAACCTGATACACGATTGGTGGTTTGGAATACAACTCAATCCTCAGTTCATGGGTATTGACCTCAAATTTTTCTTTGTTAGAGCTGGAATGTTGGGGTGGCTACTTATCAATCTATCAGTTCTTGCAAAGANCATTCAAGATAGTACCTTGAGCAAGTCAATGATTCTCTACCAGCTATTCTGTGCACTATATATCCTGGACTACTTTGTACATGAAGAGTACATGACATCCACATGGGACATAATTGCAGAGAGATTGGGCTTCATGTTGGTCTTTGGAGATTTAGTATGGATTCCTTTTACTTTTAGCATACAGGGCTGGTGGCTCTTGAGGAACAAGGTGGAGTTAACAACAGCTTCCATTATAGCTAATTGCTTTGTCTTCCTGATTGGATACATGGTATTTCGAGGAGCAAACAAGCAAAAACACGTGTTCAAGAAGAATCCAAAGGCTCCTATATGGGGTAAGCCTCCAAAAGTAGTTGGAGGNAAGCTACTTGCTTCTGGTTATTGGGGTATTGCTAGACACTGTAATTACCTAGGGGACTTGCTGCTTGCTCTCTCCTTTAGCTTACCTTGTGGGATAAGGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01440	43049	50112	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00222	TM7SF2, ERG24	EC:1.3.1.70	Steroid biosynthesis	map00100
			Steroid biosynthesis	map00100

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

cellular_component
GO:0016020 membrane

molecular_function
GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001440s00032388.2	PF01222.12	ERG4_ERG24	14	347	5.40E-63

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.937
SRR1783600	control	7.855
SRR1783602	moderate drought stress	4.668
SRR1811619	moderate drought stress	4.495

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.115
DRR006520	Root Summer glycyrrhizin high producing strain	11.574
DRR006521	Root Winter glycyrrhizin high producing strain	3.603
DRR006522	Root Winter glycyrrhizin high producing strain	3.750
DRR006523	Root Summer glycyrrhizin low producing strain	8.820
DRR006524	Root Summer glycyrrhizin low producing strain	8.777
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.064
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.984

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.722
SRR2868004	Drought Stress (root)	23.508
SRR2967015	Control (root)	22.373

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.488
SRR9715740	Leaf	6.958
SRR9715741	Leaf	8.238
SRR9715739	Root	7.771
SRR9715742	Root	12.747
SRR9715743	Root	13.228

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.002
SRR8749028	MeJA induced 9h	11.231
SRR8749029	MeJA induced 9h	7.360
SRR8749030	Uninduced	3.704
SRR8749031	Uninduced	1.091
SRR8749032	Uninduced	0.994

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.256
SRR8400027	Control - Root	22.353