Gene detail

Gene detail information of Glyur001440s00032385

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G12080.1	3.00E-46	AT-hook motif nuclear-localized protein 1
NR	XP_007145260.1	8.45E-153	hypothetical protein PHAVU_007G223900g [Phaseolus vulgaris]
Swissprot	tr\|Q9S7C9\|ESCA_ARATH	2.00E-08	Putative DNA-binding protein ESCAROLA
trEMBL	tr\|K7LZV8\|K7LZV8_SOYBN	5.00E-160	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G21430.2}

Sequence

Transcript Sequence

>Glyur001440s00032385.1
ATTCATCATGGAAGAAACACTGAACAACAACAACAACAACACTAATGTTTCTGCAGGGTCACCGCAACAACAACCATTGCCTCATGTAATGAACATGAACATGAATGTAGGGGACACTACTAGTGTTACAACACCAACAACTGTTATTAATCCTGCAGTTCAAGCCACAACAACAACAGTACAAGGACAAGGTGGGAGCTTTGATTTGTTTGGGACTAAGAAGAAAAGAGGGAGGCCAAGAAAATATGACTCAGATGGGAATCTGAGAATAACAAGTGGGAGTGCAAAACCAATAACACCACAGGGATTCACTTTGTCTACAAGTACAACAACTGAGTTCTCTTCCAAAAGGGGTCGTGGTAGAACAAGTACTGGGTTTGGAAACTACCAACAAATCCTTGCTTCTTTTGGTGAGGTGTTTGCAACCACTGCTGGGGATTTTACACCGCATGTAGTGACAGTTTATACTGGAGAGGATGTTGCTGGAAAGNTATTGTCATTCGCCCAGAAGAGTCTGAGAGGAATATGCATTCTTTCTGCCAATGGAGCTATCTCTAATGTCACCCTACGCCAACCTGGTTCTTCTGGTGGCATATTGACTTACGAGGGTCGGTTTGAGATTTTATCTTTGTCTGGATCATTCACAGTCTCCGACAGTAGTGGCATAAGAAGTAGAACAGGTGGATTGAGTGTCTCACTAGCTGGCCCTGATGGCAGGGTGATAGGAGGTGGTGTTGCTGGTNTATTGACAGCTGCTGGACCCATCCAAATTGTAGTGGGAAGCTTCATGCCAAATGGTCACAAGACNCATAAAAGGAAGTACCAACGTGAACACAACACAGTGGCCTTCCCAACTTCAGCTGGTCCAGATACAGTGACAGCAGCAAGACCCATCTCACAACAAGCNAATATTCAAGGTGAAAACTTTCTGATACCCATGTCTCAGATACCACCAGATCAAGTGCAGAGAGAATCTGTCAGTGTTTTCAGTGACAAACAGAACTTAGATGCCACACCTGATGCTGCTGCTACTACTACTTGGAATGGTTCTGAAGAGTTTTCGGATCAGAGGACATCCCCAGACATCAACATAACTTTGCCTGATGAATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01440	4314	8199	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001440s00032385.1	PF02178.14	AT_hook	71	81	0.009
Glyur001440s00032385.1	PF03479.10	DUF296	145	261	5.30E-38

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.346
SRR1783600	control	2.200
SRR1783602	moderate drought stress	3.628
SRR1811619	moderate drought stress	3.287

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.852
DRR006520	Root Summer glycyrrhizin high producing strain	2.072
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.241
DRR006524	Root Summer glycyrrhizin low producing strain	1.099
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.333
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.333

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.230
SRR2868004	Drought Stress (root)	7.282
SRR2967015	Control (root)	9.663

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.928
SRR9715740	Leaf	0.032
SRR9715741	Leaf	0.634
SRR9715739	Root	0.152
SRR9715742	Root	3.286
SRR9715743	Root	2.439

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.642
SRR8749028	MeJA induced 9h	1.906
SRR8749029	MeJA induced 9h	0.820
SRR8749030	Uninduced	0.251
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.051

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.158
SRR8400027	Control - Root	6.055