Gene detail

Gene detail information of Glyur001439s00036372

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G68640.1	4.00E-83	bZIP transcription factor family protein
NR	XP_006574877.1	0	PREDICTED: transcription factor PERIANTHIA-like isoform X1 [Glycine max]
Swissprot	tr\|Q41558\|HBP1C_WHEAT	4.00E-158	Transcription factor HBP-1b(c1) (Fragment)
trEMBL	tr\|K7K7E4\|K7K7E4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G10833.1}

Sequence

Transcript Sequence

>Glyur001439s00036372.1
CTTCTTAAAGACACATCAAGAATTTCCTTCACTTCTCAGCAGCAACACTTCTTCGTTCTCATGACAATCTTCTGATTCTTCTACCTGAACACAAAAAGATAGAACTTCATGATAATGATGCTGCTGCTTTCATGAAGAGAGAAACGAGAGAGAAGGTTTCCATGCTATGTGTGTTTTCGTAAATAATATTTAGATTCAGACAGTTTTTTTTATTTACATAAAAAAATAAATATGCAAAGCTTCAAGACAGCACCAGCAAGTTCCCAACTCTATTGCCACCCATCCTTCTTGCTTCGGGGAGACGACAGCACCAACCGGAACCCAACGCGTTTCTCTGATCTCGGGGAGCTTCACCGTTCCTCTGCTGTATTCCAACAAGAAGATGCTGTTGATTTAAGCTCAAGCTCTATGTTTTGTGTAAAGTCGAGCAATGTTGTTGTTGTTGGTGGTGGTAGCAACATGCTGTATGGGACAATGAACACGAATTATGGGTCTGGAGAGATTGGTTCAACAACAGGTGGTGTAGGGTGCTCGGATATGTACCAAAAGGGAATCGCAATGGAAAACTTGCCTTTGGGGAATGGTCATGTTGAGAATTGGGCTGATTCTTCAGGCATGGCAGATAATAGCCAACAGACTGATGATACTTCCACTGATATTGATACTGATGATAAAAACCATTGCAATAGAGTTAGGAGTGGGGCACATATGGTTGTGCACTCTAAGGATCAGACGAAGTTCAGAGCTGAAGATCACAAGACCCTTCGTAGACTCGCTCAGAATCGGGAGGCTGCAAGGAAAAGTCGGTTAAGGAAAAAGACCAAGAAGTTTGTTAATTCAATGGCATATGTACAGCAGCTGGAGAACAGTCGAGTCAAGCTTTTGCAACTAGAGCAAGAACTTCAACGAGCACGTCAGCAGGGTATGTTTATTGCAGCTCCTGGAGATCAGGGTCCTTTGGCNGTTGGAAATGGTGCCTTAGCATTCGACATGGACTATGCACACTGGGTTGAAGAGCATCAACGTCTTCTCAATGACCTAAGATCAGCTTTAAATTCTCAAATGGGTGATAATGAGCTACACCTTCTTGTTGATGGTGTCATGNCACATTATGATGAATTATTCAGGCTAAAGAGCATAGGGGCAAAGGCTGATATATTTCACATGATTAATGGGATGTGGAAGACACCTGTGGAAAGATGCTTTATGTGGCTTGGTGGATTCCGTTCATCTGAACTTCTCAAGATAGTGCAGAACCACCTTGAGCCATTAACAGAACATCAGTTGGTGGGCATTTATAATCTGCAGCAATCATCTCAACAGGCTGAGGATGCTTTAACTCAAGGCAGGGAAGCATTGCAACAATCTCTTTTGGAGACCCTTTCCTCTGCCTCCTTAGGATCCACTGGTTCTGGTGGAAATGTTGCTGATTACATGGGCCAAATGGCAATTGCAATGGACAAGCTTGCTGCACTAGAGAGCTTCCTTCATCAGGCTGACCTCTTGAAGCAACAAACCCTTCAACAGTTGCAAAGGATCTTGACCACNCGTCAGACTGCACGTGCTCTCCTTGTCAGGAATGATTACATTTCAAGATTACGGGCACTTAGTTCATTATGGTTAGCGCGCCCTAGAGAATAGGGACTTNCACATTAATGTATATCATCATCTATAGCTATAATTTTGTGCATCCTTTGTAGGACTTCCTCCTATGTTGTTGTCTCCAAACAAACTAATTGGATGTTTCTGTTCTAATATAGGAACTTCTAANATAGGAACTCACTGATGAGTTGCTGCGGCCCTCAAATATAGAGCGTCGTTAATAATCAGAAGAAAGATACCTTATCACTGGTAGCTGCTGATCTAAATTTTCATTAGAAGATAGGTTAATGACCTGAAATTAGATCTATTTGGGATGCTTTGTGGTTTGTATATTATTGGCACATTCGAGTGGTTATTGTGAAAGTGCTAACATTGAAAAGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01439	31914	37022	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006351 transcription, DNA-templated

GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001439s00036372.1	PF14144.1	DOG1	265	342	1.10E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.181
SRR1783600	control	1.223
SRR1783602	moderate drought stress	1.860
SRR1811619	moderate drought stress	1.863

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.232
DRR006520	Root Summer glycyrrhizin high producing strain	6.245
DRR006521	Root Winter glycyrrhizin high producing strain	1.096
DRR006522	Root Winter glycyrrhizin high producing strain	1.068
DRR006523	Root Summer glycyrrhizin low producing strain	10.289
DRR006524	Root Summer glycyrrhizin low producing strain	10.328
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.046
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.046

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.584
SRR2868004	Drought Stress (root)	5.346
SRR2967015	Control (root)	11.761

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.231
SRR9715740	Leaf	0.216
SRR9715741	Leaf	0.066
SRR9715739	Root	1.686
SRR9715742	Root	2.283
SRR9715743	Root	1.697

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.707
SRR8749028	MeJA induced 9h	0.889
SRR8749029	MeJA induced 9h	1.502
SRR8749030	Uninduced	0.299
SRR8749031	Uninduced	0.154
SRR8749032	Uninduced	0.163

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.570
SRR8400027	Control - Root	2.039