Gene detail information of Glyur001439s00036369 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G68630.1 | 7.00E-20 | PLAC8 family protein |
| NR | XP_003516837.1 | 1.02E-41 | PREDICTED: protein PLANT CADMIUM RESISTANCE 9-like [Glycine max] |
| Swissprot | tr|Q9SX26|PCR12_ARATH | 2.00E-24 | Protein PLANT CADMIUM RESISTANCE 12 |
| trEMBL | tr|I1J6M6|I1J6M6_SOYBN | 4.00E-42 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G20980.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01439 | 12930 | 13302 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001439s00036369.1 | PF04749.12 | PLAC8 | 2 | 45 | 1.60E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.920 |
| SRR1783600 | control | 1.609 |
| SRR1783602 | moderate drought stress | 2.632 |
| SRR1811619 | moderate drought stress | 2.450 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.394 |
| SRR2868004 | Drought Stress (root) | 22.766 |
| SRR2967015 | Control (root) | 8.143 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.463 |
| SRR9715740 | Leaf | 0.061 |
| SRR9715741 | Leaf | 0.345 |
| SRR9715739 | Root | 0.040 |
| SRR9715742 | Root | 2.740 |
| SRR9715743 | Root | 0.514 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.778 |
| SRR8749028 | MeJA induced 9h | 4.317 |
| SRR8749029 | MeJA induced 9h | 2.663 |
| SRR8749030 | Uninduced | 17.865 |
| SRR8749031 | Uninduced | 61.016 |
| SRR8749032 | Uninduced | 12.343 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.946 |
| SRR8400027 | Control - Root | 5.557 |