Gene detail

Gene detail information of Glyur001437s00030309

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G14470.1	6.00E-122	NB-ARC domain-containing disease resistance protein
NR	XP_004490619.1	0	PREDICTED: putative disease resistance protein RGA4-like isoform X1 [Cicer arietinum]
COG	YP_001660791.1	1.00E-10	apoptotic protease-activating factor 1 like [Microcystis aeruginosa NIES-843]
Swissprot	tr\|Q7XA39\|RGA4_SOLBU	0	Putative disease resistance protein RGA4
trEMBL	tr\|G7K728\|G7K728_MEDTR	0	Disease resistance protein RGA4 {ECO:0000313\|EMBL:AES98707.1}

Sequence

Transcript Sequence

>Glyur001437s00030309.1
ATGGCTGAGGCATTACTGGGAGTTGTGTTTGACAATTTGCTATCTCTGGTTCAAAATGAATTTGCGACTATTTCTGGAATCAAAAAAAAAGCTGAAAAGCTATCAAACACCTTGGATCTAATCAAGGCCGTTCTCGAAGATGCCGAGGAGAAACAAGTAACCAACCGTCCCATAAAAGTATGGCTACAACAACTCAAAGATGCTGTATATGTGCTAGATGACATCCTTGATGAATGTTCCACTGAATCCCGTCGACTTAGGAGCGGCTCATCCTCTTTCAATCCAAAGAACATCATGTTTCGCCATAAGATAGGCAACAGGTTGAAAGAGATTGCAGGGAGATTCGATCAGATTGCTGAAAGTAAGAATAAGTTTCTTCTGCGAGAGGGTGTTAGGGACAGACCAACTGAAGTGGCTGAATGGCGCCAGACCAGCTCAACTATTGCCGAACCAAAAGTGTATGGGCGAGAAGATGATAAGGAGAAGATCATGGAGTTTCTTCTCAGCCAAGAGCAGGGCTCTAAATTCCTTTCCGTCTATCCCATCGTTGGCTTAGGTGGTGTTGGAAAAACAACACTTGCTCAGATGGTCTACAACGACAACAAGGTGAGTAGCAAATTTGATACAAAAATCTGGATTTGTGTTTCTGAGATTTTCTCTGTGAAGAGGATTCTGTGTTCTGTTATAGAATCTATCACTATGGAAAAGTATGATGTGTTTGGTTTAGATTCAATAGAAAGAAGAGTGCAAGAACTTTTGCAAGGCAAAAGGTACTTGCTGGTTCTAGATGATGTATGGAATAGAAACCAAGAATTGGAATTCGGATTAAGCCAAGACAAATGGAACAAGCTGAAATCTGTGCTATCATGTGGATCCAAAGGTGCTTCTGTTTTGGTTTCCACTCGTGATAAGGATGTTGCAGCAATCATGGGAACATGCCAAGCTCATCATTTGTCTGGTCTCTCTGAAAATGAATGTTGGTTGTTGTTCAAACAATATGCATTTGGACGCGACACAGAAGAGCGGGGAGAGCTTGTAGCAATAGGCAAGGAGATAGTAAAGAAGTGCGGGGGATTGCCTCTTGTAGCACAAGCATTGGGAGGCTTACTATGCTCAAGGAGTAAAGAAAAGGAATGGCTTGAGATCAAAGAGAGCGCGCTTTGGACTTTATCGGATGAGAATTCTATTTTGCCTGCCTTGAGGTTAAGCTACTTTTATTTAACACCAACCTTAAAGCAGTGTTTCGCCTTTTGTGCTATATTTCCCAAAGATACAGAAATCAGGAAGGAAGATTTGATTCATCTTTGGATGGCTAATGGGTTTATTTCATCCAAGGTAAATTTGGAGGTAGAAGATGTTGGCAATATGATTTGGAATGAATTATGCCAAAAATCATTCTTCCAAGATATCGAGATGGATTACAAAGGATACATTTATTTCAAGATGCATGATCTTCTCCATGATCTTGCTCAATCAGTCATGGGGTCAGAGTGTATGATTTTGGAGAATGCAAACATGACTGGTTTGTCAAGAAGCACCCACCATATTGGTTTTGGCTCTCCTGAATTGTTATCAACCAATGAGAATGCCTTCAGAAAAGTCGAATCCCTACGGACACTATATCAGTTAAAATTTGACAACAAAACATTTTTTGACTGCCTCCCAACAAACCGTTTCCTTCGGGTTTTACGCATATACTCTTGCAAGCTATCATCACTCGGGAGGTTAGTTCATCTAAGGTATTTGGAGCTTTTTCATCTAGACATAGAAACCCTACCTGACTCAATTTACAGCTTGCAGAAATTAGAAATCTTGAAATTGATGGATTGTGACAAACTTAGTTGTTTACCGAAACACTTGACTTGCTTACAGAATCTCAGACATCTTATCATTAAAGGTTGTATTTCATTGTCTCGTTTGTTCCCTAACATTGGAAAATTATCTTGCCTAAGAACATTAAGTGTATACATTGTCGAATTAGAGACAGGGCATAGCTTGGCAGAGTTACATGGTCTAAAGCTGGGAGGAGAACTAAAGATCGGAGCCCTAGAAAGGGTTGGCAGTTTAGCTGAAGCTCGAGAGGCCAATTTGATGGGTAAAAAGGACCTCCAAAAATTGTGCTTGTCATGGAGCAGTAGTTGTGAAATCGAGAGACCTGCTACTAGTGCTGAGCAAGTACTTGAAGTGCTTCAACCCCACTCAAATCTCGAGAAGTTGCGTATACATGACTACGACGGATTATGCTTGCCAAGTTGGATCAGATTTCTTAGTATTTTAGTTCATGTTGAACTTGTGGGTTGTCAGAACTGCATGCGGATTTCACCACTTGGTAAACTACCATCTCTAAAACAACTCACCTTATACAAAATGGATAATGTGCAGTACCTGGATGATGATGAATCTCACGATGGTGTCGAGGTGAGGGTTTTCCCATCTTTGGAGGAACTCTATTTAAATTGGTTGCCGAACTTAGAGCGATTGTTGAAAGTGGAAAGACGGGAGATGTTCCCCCGTCTTTCTAAGTTGACCATCGGCAATTGCCCTAAACTTTTATTGCCATGCCTTCCATCTGTTAAACACCTCTCTGCACATGGATGTAACAATGAATTACTGAAGTCAATCTCTAGTGGAGACACGACATCCTTCTCAGAGGGGATGGTCAGAAACTTGACTTGTCTTCAAACTCTAACAGTATCTGATTTCCCAAAGTTGAAGGAATTACCAAATGAACTCCTCAACCTAGCTATTTTGGAGCATCTGAATATCTATCATTGTGGTGAGCTTGAGGCTTTACCGGAGGAAATTTGGGAAGGTCTTCAATGCCTTCGAACGCTGACAATTATTGGTTGTAAAGGATTGAGATATTTGCCAGAAGGTATCCGACACCTCACTTCACTTGAGGTTCTAACTATTGCTCGTTGCCCAACATTAAAGGAGCGATGTAAGGAGGGAACAGGGGAGGACTGGGACAAGATAGCACACATTCCAAGATTAAAGGAAATGGCAGTACTCTTGGACCTCAGGACCACAACTTTTGGGAAGATCAGTTGCATTGCATCCCCTTCTGCTGCAACTGGTGTCACTTCTTTTGACAATACAACAGCTTCACCAATCCCATATGCCAATTCACAAATATGA

Protein Sequence

>Glyur001437s00030309.1
MAEALLGVVFDNLLSLVQNEFATISGIKKKAEKLSNTLDLIKAVLEDAEEKQVTNRPIKVWLQQLKDAVYVLDDILDECSTESRRLRSGSSSFNPKNIMFRHKIGNRLKEIAGRFDQIAESKNKFLLREGVRDRPTEVAEWRQTSSTIAEPKVYGREDDKEKIMEFLLSQEQGSKFLSVYPIVGLGGVGKTTLAQMVYNDNKVSSKFDTKIWICVSEIFSVKRILCSVIESITMEKYDVFGLDSIERRVQELLQGKRYLLVLDDVWNRNQELEFGLSQDKWNKLKSVLSCGSKGASVLVSTRDKDVAAIMGTCQAHHLSGLSENECWLLFKQYAFGRDTEERGELVAIGKEIVKKCGGLPLVAQALGGLLCSRSKEKEWLEIKESALWTLSDENSILPALRLSYFYLTPTLKQCFAFCAIFPKDTEIRKEDLIHLWMANGFISSKVNLEVEDVGNMIWNELCQKSFFQDIEMDYKGYIYFKMHDLLHDLAQSVMGSECMILENANMTGLSRSTHHIGFGSPELLSTNENAFRKVESLRTLYQLKFDNKTFFDCLPTNRFLRVLRIYSCKLSSLGRLVHLRYLELFHLDIETLPDSIYSLQKLEILKLMDCDKLSCLPKHLTCLQNLRHLIIKGCISLSRLFPNIGKLSCLRTLSVYIVELETGHSLAELHGLKLGGELKIGALERVGSLAEAREANLMGKKDLQKLCLSWSSSCEIERPATSAEQVLEVLQPHSNLEKLRIHDYDGLCLPSWIRFLSILVHVELVGCQNCMRISPLGKLPSLKQLTLYKMDNVQYLDDDESHDGVEVRVFPSLEELYLNWLPNLERLLKVERREMFPRLSKLTIGNCPKLLLPCLPSVKHLSAHGCNNELLKSISSGDTTSFSEGMVRNLTCLQTLTVSDFPKLKELPNELLNLAILEHLNIYHCGELEALPEEIWEGLQCLRTLTIIGCKGLRYLPEGIRHLTSLEVLTIARCPTLKERCKEGTGEDWDKIAHIPRLKEMAVLLDLRTTTFGKISCIASPSAATGVTSFDNTTASPIPYANSQI

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01437	52003	55533	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001437s00030309.1	PF00931.17	NB-ARC	156	444	1.60E-72

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.820
SRR1783600	control	1.918
SRR1783602	moderate drought stress	2.294
SRR1811619	moderate drought stress	2.140

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.936
DRR006520	Root Summer glycyrrhizin high producing strain	1.713
DRR006521	Root Winter glycyrrhizin high producing strain	0.142
DRR006522	Root Winter glycyrrhizin high producing strain	0.111
DRR006523	Root Summer glycyrrhizin low producing strain	0.510
DRR006524	Root Summer glycyrrhizin low producing strain	0.721
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.362
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.342

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.187
SRR2868004	Drought Stress (root)	2.402
SRR2967015	Control (root)	1.672

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.219
SRR9715740	Leaf	1.276
SRR9715741	Leaf	2.252
SRR9715739	Root	0.988
SRR9715742	Root	6.721
SRR9715743	Root	5.655

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.406
SRR8749028	MeJA induced 9h	1.181
SRR8749029	MeJA induced 9h	0.425
SRR8749030	Uninduced	0.359
SRR8749031	Uninduced	0.813
SRR8749032	Uninduced	0.244

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.425
SRR8400027	Control - Root	6.487