Gene detail information of Glyur001437s00030308.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G10480.2 | 2.00E-21 | Protein-tyrosine phosphatase-like, PTPLA |
| NR | XP_007156477.1 | 9.17E-39 | hypothetical protein PHAVU_003G289100g [Phaseolus vulgaris] |
| Swissprot | tr|Q7XSZ4|PAS2A_ORYSJ | 9.00E-36 | Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A |
| trEMBL | tr|V7CHT6|V7CHT6_PHAVU | 3.00E-39 | Uncharacterized protein {ECO:0000313|EMBL:ESW28471.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01437 | 47425 | 49159 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K10703 | PHS1, PAS2 | EC:4.2.1.134 | Fatty acid metabolism | map01212 |
| Fatty acid elongation | map00062 | |||
| Biosynthesis of unsaturated fatty acids | map01040 |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001437s00030308.1 | PF04387.9 | PTPLA | 1 | 70 | 2.00E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.147 |
| SRR1783600 | control | 0.013 |
| SRR1783602 | moderate drought stress | 0.370 |
| SRR1811619 | moderate drought stress | 0.322 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.290 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.344 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.063 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.080 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.776 |
| SRR2868004 | Drought Stress (root) | 6.628 |
| SRR2967015 | Control (root) | 2.502 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.317 |
| SRR9715740 | Leaf | 0.138 |
| SRR9715741 | Leaf | 0.120 |
| SRR9715739 | Root | 0.392 |
| SRR9715742 | Root | 0.187 |
| SRR9715743 | Root | 0.442 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.010 |
| SRR8400027 | Control - Root | 0.963 |