Gene detail

Gene detail information of Glyur001437s00030303.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G17530.3	0	Protein kinase superfamily protein
NR	AET03584.2	0	Serine/Threonine kinase family protein [Medicago truncatula]
COG	YP_004584373.1	8.00E-12	serine/threonine protein kinase with PASTA sensor(s) [Frankia symbiont of Datisca glomerata]
Swissprot	tr\|P51568\|AFC3_ARATH	2.00E-41	Serine/threonine-protein kinase AFC3
trEMBL	tr\|G7L8Q0\|G7L8Q0_MEDTR	0	Serine/Threonine kinase family protein {ECO:0000313\|EMBL:AET03584.2}

Sequence

Transcript Sequence

>Glyur001437s00030303.1
TAAAATGCCACAAACACATGAGAAGAAGCATGGTAAGGGAAGGACAAAACAGAGAGAGAAAAGTGGAGGATTGTTGAAGAGCGAGAGGCCTGTGATTGAAAAGGCCACACACCGCAAATAGAACCCAACAAGAGTTTTCCTTCCCCGAAACAAAAGCTTCAAATTTTGGTGAGCTTCATCCACAATCACACGATTTCTGAAAATGGGGGTTTGAAAAAAACAAACAAACAGAGTAGGAGGAGGATTCACTTGGCGGTTTTAGAAGAAGGTGAAAAAAGGAAGAGTTTTTTGGTGAAGTGAGTTGTGAATAGATCAGAGGGTGATGTCGTGTTCTTCTTCATCAGGGTCGGAAGAAGAAGATGAGGGGTTCGACTCCTACAGGAAAGGAGGCTACCACGCCGTCAGGGTCGGCGATCAGTTCGCCGGCGGCAGGTACATAGCGCAGAGGAAACTCGGTTGGGGTCAGTTTTCCACTGTTTGGCTTGCTTATGATACTACCACCTCTGCATATGTTGCTCTCAAAATCCAGAAAAGTGCGGCCCAGTTTGTTCAGGCTGCCCTTCATGAGATTGATGTTCTTTCATCCATTGCTGATGGTGCTCCTTCGAATACAAAATTCGTCGTCCAATTGATTGACCACTTTAAGCACACNGGTCCTAATGGCCAGCACCTTTGCATGGTACTTGAGTTTCTTGGAGATAGCTTGCTTCGTCTTATCAGATACAACCGTTACAAAGGCCTTCCAATGAACAAAGTTAGGGAGATTTGCAAATGCATTTTGATTGGTTTGGATTACTTGCACAGAGAACATGGTATTATCCACACAGACCTAAAACCAGAAAATGTTCTTCTGGTTTCTACAATTGATCCTGCCAAAGACCCTGTTAGGTCTGGATTCACCCCAATTTTAGAGAGGCCTGAGCTTGAGGGAAACATAAATGGCGGAGTTACGAGCCTTATCGAGAAAAAGTTGAAAAGGAGAGCAAGGAGGGCAGTTGCTAAAATATCTGGAAGAAGAGATTCAATANTGGGAGGAACAGGAGAAGCTCCAAAGTCTGATAGAAATATTGATGGGATTGATGTGAGGTGCAAAGTGGTAGATTTTGGAAATGCATGTTGGGCTGATAAGCAGTTTGCAGAAGAGATTCAGACAAGACAGTACAGAGCTCCTGAAGTAATACTGCAGGCTGGTTATTCCTTCTCTGTTGACATGTGGTCTTTTGCTTGTATNGCTTTCGAGCTCGCCACTGGTGATATGTTGTTTACTCCCAAGGTTGGACAAGGTTTTAGTGAGGATGAGGATCACCTTGCCTTGATGATGGAACTCCTTGGAAAGATGCCCCGGAAGGTTGCTACCGCAGGAGCGAAATCCAAGGATTTCTTCGACAGACACGGGGATCTCAGGAGGATCCGAAGGCTAAAATTCTGGCCGCTTAACAAATTGTTGGTTGATAGATATAAGTTTCCGGAGAGNGACGCTCATGAGTTTTCGGAGTTCCTTTTACCTCTTCTCGATTTTGCGCCCGAGAAGCGGCCAACTGCNCAGCAGTGCCTGCAACACCCTTGGCTCATGGGCATGGAATCTGTTCCTAATGAAATGAGAAATGAAACTAGTGTGGAAAAAGTGGATGTTGGGATGAGCAACCTTAAGATCAAGGTGGGGAAGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01437	17118	21277	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.5.7

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001437s00030303.1	PF00069.20	Pkinase	40	416	9.90E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.474
SRR1783600	control	13.500
SRR1783602	moderate drought stress	16.776
SRR1811619	moderate drought stress	16.593

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	24.353
DRR006520	Root Summer glycyrrhizin high producing strain	23.400
DRR006521	Root Winter glycyrrhizin high producing strain	23.978
DRR006522	Root Winter glycyrrhizin high producing strain	23.216
DRR006523	Root Summer glycyrrhizin low producing strain	28.755
DRR006524	Root Summer glycyrrhizin low producing strain	29.737
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.511
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.666

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	32.764
SRR2868004	Drought Stress (root)	35.676
SRR2967015	Control (root)	39.971

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	25.596
SRR9715740	Leaf	28.562
SRR9715741	Leaf	28.651
SRR9715739	Root	10.325
SRR9715742	Root	26.393
SRR9715743	Root	24.327

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.383
SRR8749028	MeJA induced 9h	12.530
SRR8749029	MeJA induced 9h	8.722
SRR8749030	Uninduced	10.942
SRR8749031	Uninduced	8.323
SRR8749032	Uninduced	4.882

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	37.457
SRR8400027	Control - Root	42.522