Gene detail information of Glyur001437s00030302 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G27710.3 | 1.00E-12 | 60S acidic ribosomal protein family |
| NR | KEH38965.1 | 8.96E-42 | 60S acidic ribosomal protein [Medicago truncatula] |
| Swissprot | tr|O24415|RLA2B_MAIZE | 5.00E-34 | 60S acidic ribosomal protein P2B |
| trEMBL | tr|A0A072VLF0|A0A072VLF0_MEDTR | 3.00E-42 | 60S acidic ribosomal protein {ECO:0000313|EMBL:KEH38965.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01437 | 14756 | 16199 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001437s00030302.1 | PF00428.14 | Ribosomal_60s | 17 | 112 | 6.90E-27 |
| Glyur001437s00030302.2 | PF00428.14 | Ribosomal_60s | 17 | 112 | 6.90E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 32.956 |
| SRR1783600 | control | 32.407 |
| SRR1783602 | moderate drought stress | 42.172 |
| SRR1811619 | moderate drought stress | 41.508 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 154.779 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 154.391 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 38.397 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 37.099 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 125.259 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 127.486 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 22.352 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 22.668 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 186.889 |
| SRR2868004 | Drought Stress (root) | 108.715 |
| SRR2967015 | Control (root) | 109.615 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 59.395 |
| SRR9715740 | Leaf | 63.425 |
| SRR9715741 | Leaf | 57.711 |
| SRR9715739 | Root | 273.484 |
| SRR9715742 | Root | 187.648 |
| SRR9715743 | Root | 197.690 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 214.151 |
| SRR8749028 | MeJA induced 9h | 67.301 |
| SRR8749029 | MeJA induced 9h | 123.505 |
| SRR8749030 | Uninduced | 22.705 |
| SRR8749031 | Uninduced | 9.031 |
| SRR8749032 | Uninduced | 68.327 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 232.741 |
| SRR8400027 | Control - Root | 189.817 |