Gene detail information of Glyur001437s00030300 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G10720.2 | 2.00E-54 | Ankyrin repeat family protein |
| NR | XP_003629109.1 | 4.41E-115 | Ankyrin repeat protein [Medicago truncatula] |
| COG | YP_001958218.1 | 1.00E-13 | hypothetical protein Aasi_1153 [Candidatus Amoebophilus asiaticus 5a2] |
| Swissprot | tr|Q9ZU96|Y2168_ARATH | 3.00E-12 | Ankyrin repeat-containing protein At2g01680 |
| trEMBL | tr|G7L8Q1|G7L8Q1_MEDTR | 2.00E-115 | Ankyrin repeat protein {ECO:0000313|EMBL:AET03585.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01437 | 3688 | 4383 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001437s00030300.1 | PF12796.2 | Ank_2 | 13 | 92 | 1.20E-06 |
| Glyur001437s00030300.1 | PF12796.2 | Ank_2 | 114 | 201 | 5.70E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.182 |
| SRR1783600 | control | 0.180 |
| SRR1783602 | moderate drought stress | 1.745 |
| SRR1811619 | moderate drought stress | 1.668 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.353 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.281 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.101 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.791 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.066 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.803 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.663 |
| SRR2868004 | Drought Stress (root) | 1.176 |
| SRR2967015 | Control (root) | 1.057 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.295 |
| SRR9715740 | Leaf | 2.257 |
| SRR9715741 | Leaf | 2.665 |
| SRR9715739 | Root | 0.012 |
| SRR9715742 | Root | 0.207 |
| SRR9715743 | Root | 0.324 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.408 |
| SRR8400027 | Control - Root | 3.313 |