Gene detail

Gene detail information of Glyur001435s00032609

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G14000.1	0	VH1-interacting kinase
NR	XP_003517809.1	0	PREDICTED: dual specificity protein kinase splA-like isoform X1 [Glycine max]
COG	YP_003266171.1	5.00E-28	serine/threonine protein kinase [Haliangium ochraceum DSM 14365]
Swissprot	tr\|Q2MHE4\|HT1_ARATH	1.00E-46	Serine/threonine-protein kinase HT1
trEMBL	tr\|I1J5U2\|I1J5U2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G06290.1}

Sequence

Transcript Sequence

>Glyur001435s00032609.1
AAACAACAATTCTGTTGAATTAGTAAAAGCAGAATAACTGATATAGAACCAAAAACTTCACAATCACGTTACACACACACACACACACACACACACACCAGAAAGCCGCAAATCGCATTTGCATTTTGCATTTTCAGATTGGTAATAAATCAGTTACGGAACCATCGGCGATGAGCGGCGGCGGCGGCGGAGACACGACGGAGAAGGAGAAGGAGAAGGAGAAGGCGAGGGTGAGCCGGACGTCGCTGATACTGTGGCACGCACACCAGAACGACGCGGCGGCGGTGAGGAAGCTTCTGGAAGAGGATCCTTCGCTTGTGAAGGCGAGGGATTACGACCACCGCACGCCGCTCCACGTGGCTTCGCTCCACGGATGGCTCGATGTTGCCAACTGCTTGCTTGAATTCGGTGCCGACGTCAACGCCCAGGACCGTTGGAAAAACACCCCTCTGGCTGATGCAGAAGGAGCTGAGAGGAGTGCCATCATTGAGCTTTTGAAATCACACGGAGGCTTGTCTTATGGCCAAACTGGAAGCCATTTTGAGCCAAAGACTGTTCCACCCCCGTTGCCTAACAAGTGTGATTGGGAAGTTGACCCTTCTGAGCTGGACTTCTCAACTTCAGTTTGCATTGGAAAGGGATCTTTTGGTGAGATTTTAAAAGCCCTTTGGCGTGGAACACCTGTTGCTGTCAAACGCATTCTTCCATCTCTGTCAGATGATAGATTGGTGATCCAAGACTTCAGGCATGAGGTTAATTTACTTGTAAAGCTTCGACATCCTAATATTGTTCAGTTTCTTGGAGCCGTTACTGACAGGAAGCCCCTTATGTTAATTACTGAGTATCTAAGAGGAGGTGATCTACATAAGTACCTCAAGGAAAAAGGTTCACTTAGTCCTTCAACAGCTATCAACTTTGGCTTGGATATTGCCAGAGGGATGGCCTATCTTCACAATGAACCAAATGTTATTATTCATCGAGACCTGAAACCAAGGAATGTTCTTTTAGTCAATTCTGGTGCTGACCATTTAAAAGTTGGAGATTTTGGACTTAGTAAGCTCATTAAGGTCCAAAGTTCCCATGACGTATACAAGATGACNGGTGAAACCGGAAGCTACCGCTATATGGCTCCTGAAGTTTTCAAACACCGGAGATATGATAAGAAGGTTGANGTGTTCTCCTTTGCAATGATTCTGTACGAGATGCTTGAAGGTGAACCACCTTTTTCACATTATGAACCTTATGACGGTGCCAAATACGTGGCAGAAGGACACAGGCCTGCTTTTCGGTTAAAGGGTTATATCCCAGAACTACGAGAGTTAACAGAGCAGTGTTGGGCTGCAGACATGAATCAAAGACCTACCTTCATAGAGATCCTTAAACGGCTTGAAAAGATCAAGGAAAGTTTACCTTCAGATCATCACTGGAGCTTGTTCACTTCATAAATTCTAGGAGCATTGGATTAATTAATGTCCAGAAATTTCAGATGATTATTTTCCATTAACATGCCAGCGGGCTGCCTTCTCTTCTGCTGCGGGGTTTATAAATAAAAGGCNACTTGGAAAACCAGGCGAAGTCATGAGGCTTGTTTTCAACTGTTCCTCTCTAATGAGCATAACNGTTGATGCTAAATGCTGATTGCCTCTATCAGGCGTCTACATTCGGTCACTCTTTTGTCTGGTTAAAATTCTTNGGCAGTTACATTCAGCTATTCAAGTGACCAGATACAGCTTATACAAGTATTGCATAAGGGTAAGAGAAATGCCACCTACATACTCTCTAACATAATCTTTCACACNCTCCACGATTGGTTGAAATCCATGTGGTTTCCATCACTTTAGAAATAGGTTCCACTAAATAGGATATGAGATCCACATGATTTAGTGGGACCTACATGGATTTGAACCAATCATGGAGAATGTGAATGCTTTTAGTGTCCAAAAACCATTGAGGGAATAGATCACGTCATGCTATCGACGATTTAATATTTGAGAAATGTTAGCAATATATTTTCCAACGTAGTATTTATTTTCAATACATTTTTTATTATTGGGTGAAATTCATATGNGTTCTAGCATTTTGGAACTACTCTCACAGTCTCACGAAATAGGGAATGAGACTCATAATTTAGTGGAACTCATGAATTCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01435	55261	63312	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:2.1.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006468 protein phosphorylation

GO:0009966 regulation of signal transduction

molecular_function

GO:0004672 protein kinase activity

GO:0004674 protein serine/threonine kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001435s00032609.1	PF12796.2	Ank_2	31	113	5.50E-13
Glyur001435s00032609.1	PF00069.20	Pkinase	151	405	3.80E-61

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.997
SRR1783600	control	2.084
SRR1783602	moderate drought stress	2.079
SRR1811619	moderate drought stress	1.938

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.589
DRR006520	Root Summer glycyrrhizin high producing strain	3.570
DRR006521	Root Winter glycyrrhizin high producing strain	5.217
DRR006522	Root Winter glycyrrhizin high producing strain	5.381
DRR006523	Root Summer glycyrrhizin low producing strain	3.432
DRR006524	Root Summer glycyrrhizin low producing strain	3.371
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.722
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.695

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.309
SRR2868004	Drought Stress (root)	7.012
SRR2967015	Control (root)	7.744

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.542
SRR9715740	Leaf	13.077
SRR9715741	Leaf	13.143
SRR9715739	Root	3.663
SRR9715742	Root	3.454
SRR9715743	Root	3.452

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.334
SRR8749028	MeJA induced 9h	12.508
SRR8749029	MeJA induced 9h	7.154
SRR8749030	Uninduced	7.805
SRR8749031	Uninduced	7.144
SRR8749032	Uninduced	4.768

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.804
SRR8400027	Control - Root	7.051