Gene detail information of Glyur001435s00032604 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G69450.2 | 1.00E-164 | Early-responsive to dehydration stress protein (ERD4) |
| NR | XP_006574920.1 | 0 | PREDICTED: uncharacterized membrane protein YLR241W-like isoform X5 [Glycine max] |
| Swissprot | tr|F4I248|CSCLB_ARATH | 0 | CSC1-like protein At1g69450 |
| trEMBL | tr|K7K7Q0|K7K7Q0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G12400.5} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01435 | 20537 | 27691 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001435s00032604.1 | PF13967.1 | RSN1_TM | 5 | 82 | 5.40E-12 |
| Glyur001435s00032604.1 | PF02714.10 | DUF221 | 240 | 556 | 1.10E-87 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.725 |
| SRR1783600 | control | 10.780 |
| SRR1783602 | moderate drought stress | 14.929 |
| SRR1811619 | moderate drought stress | 14.981 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.849 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.643 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 34.424 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 33.722 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.590 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.569 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.349 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.009 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.993 |
| SRR2868004 | Drought Stress (root) | 9.421 |
| SRR2967015 | Control (root) | 8.168 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.061 |
| SRR9715740 | Leaf | 21.329 |
| SRR9715741 | Leaf | 10.010 |
| SRR9715739 | Root | 7.319 |
| SRR9715742 | Root | 9.273 |
| SRR9715743 | Root | 7.812 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.924 |
| SRR8749028 | MeJA induced 9h | 2.019 |
| SRR8749029 | MeJA induced 9h | 1.286 |
| SRR8749030 | Uninduced | 1.780 |
| SRR8749031 | Uninduced | 1.376 |
| SRR8749032 | Uninduced | 0.495 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.889 |
| SRR8400027 | Control - Root | 13.478 |