Gene detail

Gene detail information of Glyur001434s00037076

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G52510.1	1.00E-123	SCARECROW-like 8
NR	XP_004512836.1	0	PREDICTED: scarecrow-like protein 8-like [Cicer arietinum]
Swissprot	tr\|Q9FYR7\|SCL8_ARATH	2.00E-154	Scarecrow-like protein 8
trEMBL	tr\|V7C4K6\|V7C4K6_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW24195.1}

Sequence

Transcript Sequence

>Glyur001434s00037076.1
ATGTCGTCGCCGGGGTTCACTAGCGGTGGTGGAGCGTCGGAGTTCTTCGCCGGCGGCAGATCCACCACCACCCCTTCCTCCGCCGTCACAAATAACAACACCACCCTCCACCACCACCCTTCTCTCTACCGAACCCAACAACAACAACAACAACTACCACCAATCTTTCTAGATCCTTCTTCTCAGATCCCACATCGCCAAACACCATCATCACCCCTCATCGGTAAACGCACCCTCGCTGAATTCCAAACCCAACAACAACACAACCAAAACTACAACCTCCTCAACCACAACAACAACGTTAACAACAACGTTAACCACAATCACGTTCTCTCTAACCTCCTACTTCGTTCCGTTAAACCAAGAACTACTTTTCACTCTTCACCCATGGATTTCTCCGTCCAAAACCCTCTTTCTTTCCAAACGCAGCGTTTAGGTGTTCCTTTGCTTCACCAACTTCGCCCCCAACCCATTAACCCGAACCTCCTCCCGAACCAGAATTTTAATTTTAATAATTCCCAGTACAGAAACTCCTCCAATTTGGGTCAGGTTCGGAGTTCCGAACCTGAGAAGAAGATCATGGACCACAGGCTTCTTATGGAGTTAGAGAAACAGCTTCTAGAAGATAACGACGAAGGAGAAGAAGCCGATGCTGCTTCTGTTATAACCACCAGCGAGTGGTCAGAGACATATCAGAACCTAATCAACCCAGGTTCGGGTACCGGTTCGGGTCCGAACCCGAGCCAGAAACCAGCTTCGTCATCACCAACTTCTTCGACCACTTCTTCAACTTCTTCCTCCGCGGCTTCACCTGCTTCGGGTTGTTCCAAACAGACCCTAATGGAGGCCGCGTCAGCAATTGCGGAGGGTAAAAACGACGTCGCTTCGGAGATCCTGAACCGTTTGGGTCCGAGCCCGAATAACGGTAATTCGGATCAGTGGTTAACCGATTGCATGGTTTCGGCTCTGAAATCGAGGATGAACCCGTTGGAGAATCCTCCACCTGTCGCGGAACTCTTCAGTAAGGAACACGCCGAGTCGACTCAGTTGCTGCTCGAGAACTCGGTGTGCTTCAAGGTTGGTTTCATGGCTGCGAATCTCGCGATTCTTGAAGCGGCATTCGAAGGGGAGAACAAAAGGAACGGTTTCTGCGTGGTGGATTTTGACATTGGACAGGGGAAACAGTACGTGAATCTTCTCCACGCGCTCTCGGCGCGTGGNCAGAACGGGAAGGTTTCGGTTCCGTTGCCCGCGGTGAAGATCGTTGCGGTGGCGGAGAACGGCGGCGAGGAGAGGGTGCAGGCGGTGGGTGAGATGCTGAGCCGTCAAGNGGAGAGGCTGAGGATCGGGTTCGAGTTCAAGGTAATTTCGATGGCTCAGAGACTCGCCGAGTTGACTCGTGAATCGCTTGGTCTCGACTCGGACGAGACGGTCGTGGTTAACTTCGCGTTCAGGCTGAACCGTATTCCCGANGAGAGTGTTTCCACGGAGAACCCGCGCGACGAGCTATTGAGGCGCGTGAAGAGACTCGCGCCGCGNGTGGTGACGGTTGTTGAGCAGGAGATGAACGGCAACACGGCGCCGTTTCTGGCGCGCGTTGCCGAGTCGTGGTCCTACTACGGGGCGTTGTTTGACTCTGTTGAGTCCGGGGACCGTGTCAGGGTCGAGGAGGGACTGAGTCGGAAGCTATGCAACTCGGTGGCTTGCGAAGGGAGGGATCGCGTGGAGCGTTGCGAGGTATTCGGGAAATGGCGCGCGCGCATGAGCATGGCGGGGTTCCAGTTGAAACCGCTGAGTCAGAACCTGGCCGAGTCGATAAAATCGCGACTCGCCGCGGGGAATAACAACCGAGTCAACACGGGACTCAGTGTTAAAGAAGAGAACGGTGGGATTTGCTTTGGTTGGATGGGAAGAACTCTCACCGTCGCTTCTGCTTGGCGTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01434	16290	18233	+

Gene family

Gene family	subfamily
Transcription Factors Family	GRAS

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001434s00037076.1	PF03514.9	GRAS	277	647	6.50E-88

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	41.956
SRR1783600	control	39.860
SRR1783602	moderate drought stress	44.951
SRR1811619	moderate drought stress	44.756

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	66.066
DRR006520	Root Summer glycyrrhizin high producing strain	64.579
DRR006521	Root Winter glycyrrhizin high producing strain	58.931
DRR006522	Root Winter glycyrrhizin high producing strain	57.241
DRR006523	Root Summer glycyrrhizin low producing strain	115.289
DRR006524	Root Summer glycyrrhizin low producing strain	115.113
DRR006525	Leaf Summer glycyrrhizin high producing strain	36.275
DRR006526	Leaf Summer glycyrrhizin high producing strain	34.477

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	55.103
SRR2868004	Drought Stress (root)	63.443
SRR2967015	Control (root)	83.928

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	53.595
SRR9715740	Leaf	44.198
SRR9715741	Leaf	56.193
SRR9715739	Root	188.012
SRR9715742	Root	176.864
SRR9715743	Root	174.413

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	58.609
SRR8749028	MeJA induced 9h	70.308
SRR8749029	MeJA induced 9h	67.048
SRR8749030	Uninduced	33.641
SRR8749031	Uninduced	31.891
SRR8749032	Uninduced	49.988

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	57.843
SRR8400027	Control - Root	65.450