Gene detail

Gene detail information of Glyur001431s00032970

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G03610.1	2.00E-88	GDSL-like Lipase/Acylhydrolase superfamily protein
NR	KEH42056.1	4.44E-155	GDSL-like lipase/acylhydrolase [Medicago truncatula]
COG	YP_007091764.1	4.00E-15	G-D-S-L family lipolytic protein [Chroococcidiopsis thermalis PCC 7203]
Swissprot	tr\|Q9LZS7\|GDL71_ARATH	3.00E-111	GDSL esterase/lipase At5g03610 (Precursor)
trEMBL	tr\|A0A072VKA1\|A0A072VKA1_MEDTR	2.00E-155	GDSL-like lipase/acylhydrolase {ECO:0000313\|EMBL:KEH42056.1}

Sequence

Transcript Sequence

>Glyur001431s00032970.1
ATAGTTCTCTCAAACCTCACCTTAGCTCATTCCTTCCCCCAACAAAGCTATAACCATTATTCATTCAGTTGTATTNTCCTCTCTCCTAGCTCCTAATTACTTCACTTGAAAACGCTTAATTGCACGTTTAGCTCATAATTCCATAGCTATACTATTCATGATGGACTCAGTACACAAGCATCTGTTTTCCCTCTCATGTCTTTCCCTGGTACTTGCACTCCTCTCAGGGCAATTGGGGATGCAAGTTGAGGCTCGTCATCATCCCTCAAAAAAATTGTTCGTTTTTGGGGANTCTTATGTTGATACCGGCAACACTAGAAAAGGCGTACCTGGTTCTTGGAAAGACCCTTATGGTGTCACCTTCCCCGGAAAACCTGCCGGAAGATTCTCCGACGGCAGATACGGGTTGAACTTTGCATTTGGTGGTACAGGTGTATTTGATACATCCTCTTCAAACCCAAATATGACAATCCAGATCGATTTCTTCAAGCATCTCATCGAAGAAAAAGTGTACACTGCCTCAGATCTCCGCAACTCAGTGGCTCTAGTTTCCGTTGCTGGAAATGACTACAATCATTTTTTGGCCACAAATGGCTCTTTCCAGGATTTCCCTTCTTTCATAGCCTCAGTGGTTAACCAAACCACCACCAATTTGATTCGCCTCCAAAGGTTAGGAGTGAAGAAAATTGTAGTGNGTGGTTTACAACCCCTTGGTTGCCTTCCTCAAACCACTGCTCCAACCTCGTTCCAACGTTGTAATACTACCTTTAACGACCTCGTAGTCTTCCACAACAACCTGTTGAACAAATCTGTGACCAAGTTGAACCAAGAAACCAAGGGACACACCACCTTTGTAATTCTCAACCTTTTCGACAGTTTCATGTCAGTACTGAACCACCCTTCAAGCAATGATATTAAGGACAAGCTCAAGCCATGTTGTGTTGGGGTAAGTAGCCAGTTTTCTTGTGGGAGCATGGACGAGAATAATGTGAAGAAATATAAGGTTTGTGAAAATCCCAAATCAACTTTCTTCTGGGATCTGTTGCACCCAACACAAGCAGGTTGGAACGTTGTGTATAGCAAGTTGCCGGCGAGAGCTCTTCATCAACTTCTAGTTTAATAATGCGTACTCCTAGTTTCTTTTGTTAATTTGTCCTTAATAAATTGTATTCTGTTTGTAATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01431	50380	69337	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016788 hydrolase activity, acting on ester bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001431s00032970.1	PF00657.17	Lipase_GDSL	40	305	9.70E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	23.969
SRR1783600	control	24.715
SRR1783602	moderate drought stress	21.768
SRR1811619	moderate drought stress	21.562

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.315
DRR006520	Root Summer glycyrrhizin high producing strain	5.705
DRR006521	Root Winter glycyrrhizin high producing strain	1.340
DRR006522	Root Winter glycyrrhizin high producing strain	1.400
DRR006523	Root Summer glycyrrhizin low producing strain	2.320
DRR006524	Root Summer glycyrrhizin low producing strain	2.373
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.660
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.646

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	81.020
SRR2868004	Drought Stress (root)	65.359
SRR2967015	Control (root)	59.651

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.763
SRR9715740	Leaf	0.330
SRR9715741	Leaf	0.855
SRR9715739	Root	9.855
SRR9715742	Root	15.112
SRR9715743	Root	14.967

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.529
SRR8749028	MeJA induced 9h	5.907
SRR8749029	MeJA induced 9h	4.507
SRR8749030	Uninduced	11.171
SRR8749031	Uninduced	2.515
SRR8749032	Uninduced	6.300

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	68.950
SRR8400027	Control - Root	43.734