Gene detail information of Glyur001431s00032969 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G52790.1 | 3.00E-28 | peptidoglycan-binding LysM domain-containing protein |
| NR | XP_006588839.1 | 3.12E-58 | PREDICTED: uncharacterized protein LOC102670325 [Glycine max] |
| trEMBL | tr|I1L9B7|I1L9B7_SOYBN | 1.00E-58 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G08240.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01431 | 44309 | 44647 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001431s00032969.1 | PF01476.15 | LysM | 64 | 105 | 3.10E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 22.478 |
| SRR1783600 | control | 22.957 |
| SRR1783602 | moderate drought stress | 17.920 |
| SRR1811619 | moderate drought stress | 16.830 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 22.498 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.831 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.329 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.321 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 18.861 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.968 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.202 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.329 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 43.088 |
| SRR2868004 | Drought Stress (root) | 36.897 |
| SRR2967015 | Control (root) | 28.042 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.555 |
| SRR9715740 | Leaf | 1.633 |
| SRR9715741 | Leaf | 1.134 |
| SRR9715739 | Root | 20.953 |
| SRR9715742 | Root | 20.616 |
| SRR9715743 | Root | 18.294 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.272 |
| SRR8749029 | MeJA induced 9h | 0.281 |
| SRR8749030 | Uninduced | 0.918 |
| SRR8749031 | Uninduced | 1.037 |
| SRR8749032 | Uninduced | 0.422 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 81.975 |
| SRR8400027 | Control - Root | 82.469 |