Gene detail

Gene detail information of Glyur001427s00032579

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G19830.1	2.00E-73	Peptidyl-tRNA hydrolase family protein
NR	KHN47981.1	3.08E-131	Peptidyl-tRNA hydrolase, mitochondrial [Glycine soja]
COG	YP_004174669.1	5.00E-39	peptidyl-tRNA hydrolase [Anaerolinea thermophila UNI-1]
Swissprot	tr\|Q6NLS8\|PTHM_ARATH	1.00E-102	Peptidyl-tRNA hydrolase, mitochondrial (Precursor)
trEMBL	tr\|C6TJQ3\|C6TJQ3_SOYBN	9.00E-131	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G12110.1}

Sequence

Transcript Sequence

>Glyur001427s00032579.1
ATTTCCGATCCTGAGTAGCTGCAGCGTGGCGGCCGGCGGGTGATCGCCCACTCACAAACTCCACCGCCGTCAGCGTTGAAAAGACAACGTCCATAGATAAATAATTACCATCTACCAGTGTCTCGTCAATCTTCCTTGTTCTCGACAGCAGCAGCTGAATCCAAGTGTCTTCAAAATTTTCTCATTGTTACAGTTTTGTGGAGGACATGCTCAATAGGTTAACAACCAGGCGTTGCTATTGCACCGTTGCTCCGCGCCCATGGCTTTTTGTGGGATTGGGCAACCCTGGCGACAAGTACAAAGGAACTAGACACAATGTGGGCTTTGAGATGATTGATGCATTTGCTGAGTCACAGGGGATTACCATGAACACAGTCCATTCCAAAGCCATTTTTGGAAAAGGTTTTGTTGGTGAAGTTCCCGTTTTCCTTGCAAAGCCTCAAACTTACATGAATCTCAGTGGTGAATCAGTAAGCTGCCATGATCCCACAAAGCACATGAATAGTCCTTCTAGGAGGTTATCTATTAATACTGGTTCTGAAAAGGGAATTCTGCTCTGTCTAGATGTTGAATTGTTGAAATCTTTTGTCCAAGTATTGAACGAGGAAATTATTTCTGCTAGTTCTTTGGACAGTACAGGACCACTGGCTGCTTATTACAAGTTACCTCTTAATCAAGTGCTTGTGTTCCATGACGACATGAACTTGCCATGTGGGGTGCTTCGTCTTCATGAGAAAGGTGGTCATGGAAGCCACAAAGGGCTGAAGAGTGTGATCTATCACTTCAGAGGAAATAGAGAATTTCCTCGTCTAAGAATTGGGATTGGGAAGCCTCCTGGGCAAATGGATCCTAAAGCATTTTTGCTTCAAAAGTTTAATGTAACAGCTAGACAACGAATTGATGAGGCTTTGCAAGAGGGGGTTGATGCCTTGAAGCTCCTTCTATCTAAAGGTTTGGCAGAGAGTGAAAAAAGGTTCAACAAAGAGCAGAAATATAAGCACTTAAGAGTACAGACATTACCAGTTTAATAGGATTCCATGGTGGCAAGTTGCGCTATAAGTATGATTAGTTCTTTGCTTTTTAGGTTGCAAATTGCAATAGATTGCCCGAGTTCGTATTGATGTGTAAAACGTAATGATAAAATGAGCTGAATTTTGTAAACATTCCTCAGGTATATATAGCTTTTCAAGAGGTTCTTGACAAACTTCTCCCCATCTCGACTTGTTTTAATTTGGACATTGTCTTTGTAAGGGTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01427	35701	40410	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0004045 aminoacyl-tRNA hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001427s00032579.1	PF01195.14	Pept_tRNA_hydro	20	90	3.10E-21
Glyur001427s00032579.1	PF01195.14	Pept_tRNA_hydro	144	258	3.40E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.871
SRR1783600	control	2.907
SRR1783602	moderate drought stress	4.548
SRR1811619	moderate drought stress	4.524

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.309
DRR006520	Root Summer glycyrrhizin high producing strain	6.360
DRR006521	Root Winter glycyrrhizin high producing strain	8.274
DRR006522	Root Winter glycyrrhizin high producing strain	8.545
DRR006523	Root Summer glycyrrhizin low producing strain	6.270
DRR006524	Root Summer glycyrrhizin low producing strain	6.430
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.919
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.066

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.879
SRR2868004	Drought Stress (root)	8.920
SRR2967015	Control (root)	9.424

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.346
SRR9715740	Leaf	4.055
SRR9715741	Leaf	6.724
SRR9715739	Root	2.729
SRR9715742	Root	4.914
SRR9715743	Root	4.356

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.358
SRR8749028	MeJA induced 9h	3.661
SRR8749029	MeJA induced 9h	8.140
SRR8749030	Uninduced	4.069
SRR8749031	Uninduced	3.445
SRR8749032	Uninduced	4.396

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.577
SRR8400027	Control - Root	10.728