Gene detail

Gene detail information of Glyur001427s00032575

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G19770.1	tubulin alpha-3
NR	NP_001242878.1	uncharacterized protein LOC100806907 [Glycine max]
Swissprot	tr\|O22349\|TBA3_ELEIN	Tubulin alpha-3 chain
trEMBL	tr\|C6T898\|C6T898_SOYBN	Putative uncharacterized protein {ECO:0000313\|EMBL:ACU18050.1}

Sequence

Transcript Sequence

>Glyur001427s00032575.1
ATGAGAGAGATAATAAGCATTCACATAGGACAGGCCGGTCGGCAACTCCTGCTGGGAGCTTTACTTGACTCGTCGTTCGGAGTGGCGCACGATGCCTTCAACACGTTCTTCAGCGAGACCGGTTCCGGGAAGCACGTTCCGAGAGCGGTGTTCGTGGATCTGGAGCCAACCGTCATCGACGAGGTCAGGGCCGGCACCTACCGCCAGCTCTTCCACCCCGAACAACTCATCTCCGGCAAGGAAGACGCCGCCAACAACTTCGCCAGAGGCCACTACACCGTTGGCAAAGAAATCGTAGATCTGTGCCTCGATCGTGTCAGAAAGTTGGCCGATAACTGCACCGGCCTCCAAGGGTTTTTGGTCTTCAACGCCGTTGGTGGCGGCACCGGTTCCGGCTTGGGTTCCCTCCTATTGGAACGCTTGTCCGTTTCGACGGCGGTTGTGGAGCCATACAACAGTGTTCTCTCCACCCATTCCCTCCTAGAGCACACCGATGTGGCTGTGTTGTTGGACAACGAAGCGATCTATGACATTTGCAGGAGATCCCTTGATATTGAGAGGCCCACTTACACCAACTTGAACAGGCTCATATCACAGATCATATCCTCCTTGACTACCTCACTGAGGTTTGATGGGGCCATAAATGTTGACATTACTGAGTTCCAGACCAACCTTGTCCCTTACCCTCGCATCCACTTCATGCTTTCCTCATATGCGCCTGTCATCTCCGCCGCCAAGGCCTACCATGAGCAGCTTTCGGTGCCCGAGATCACGAATGCAGTGTTCGAACCCGCCAGCATGATGGCCAAGTGTGATCCCAGGCATGGCAAGTACATGGCTTGCTGCTTGATGTATCGTGGAGATGTTGTCCCCAAGGATGTCAATGCTGCTGTTGCCACCATCAAAACAAAGAGGACTGTTCAGTTTCCTCCTTCAGTTGTGCCCGGGGGTGACCTTGCTAAGGTGCAAAGGGCTGTTTGCATGATCAGTAACAACACTGCTGTTGCCGAGGTGTTCTCTCGCATTGACCACAAGTTCGATCTCATGTATGCCAAGAGGGCCTTTGTCCACTGGTATGTCGGTGAGGGCATGGAAGAAGGGGAGTTCTCCGAAGCCCGTGAAGATCTCGCTGCTCTTGAGAAGGATTACGAGGAAGTTGGTGCCGAGGGAGCAGAAGATGAGGAGGAAGGAGAGGATTATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01427	17554	19619	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0007017 microtubule-based process

GO:0051258 protein polymerization

cellular_component

GO:0005874 microtubule

GO:0043234 protein complex

molecular_function

GO:0003924 GTPase activity

GO:0005200 structural constituent of cytoskeleton

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001427s00032575.1	PF00091.20	Tubulin	3	191	3.00E-48
Glyur001427s00032575.1	PF03953.12	Tubulin_C	229	344	3.30E-36

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	474.631
SRR1783600	control	478.646
SRR1783602	moderate drought stress	395.338
SRR1811619	moderate drought stress	396.644

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	308.549
DRR006520	Root Summer glycyrrhizin high producing strain	309.240
DRR006521	Root Winter glycyrrhizin high producing strain	104.610
DRR006522	Root Winter glycyrrhizin high producing strain	100.725
DRR006523	Root Summer glycyrrhizin low producing strain	390.226
DRR006524	Root Summer glycyrrhizin low producing strain	395.388
DRR006525	Leaf Summer glycyrrhizin high producing strain	133.678
DRR006526	Leaf Summer glycyrrhizin high producing strain	134.727

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	472.388
SRR2868004	Drought Stress (root)	289.610
SRR2967015	Control (root)	299.832

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	156.913
SRR9715740	Leaf	144.524
SRR9715741	Leaf	142.938
SRR9715739	Root	388.490
SRR9715742	Root	304.155
SRR9715743	Root	312.867

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	273.039
SRR8749028	MeJA induced 9h	170.383
SRR8749029	MeJA induced 9h	137.800
SRR8749030	Uninduced	39.765
SRR8749031	Uninduced	20.629
SRR8749032	Uninduced	26.712

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	339.735
SRR8400027	Control - Root	352.189