Gene detail

Gene detail information of Glyur001426s00029333

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G57160.1	0	DNA ligase IV
NR	XP_004487997.1	0	PREDICTED: DNA ligase 4-like [Cicer arietinum]
COG	NP_615688.1	3.00E-32	DNA ligase (ATP) [Methanosarcina acetivorans C2A]
Swissprot	tr\|Q9LL84\|DNLI4_ARATH	0	DNA ligase 4
trEMBL	tr\|K7MBU8\|K7MBU8_SOYBN	0	DNA ligase {ECO:0000256\|RuleBase:RU000617}

Sequence

Transcript Sequence

>Glyur001426s00029333.1
ATGACGGAGCAAACGAAGTTCAGCGTGCTATGCAGCCTATTCACGTGGACACAGCGAAGCAAATCGCCGGCAAAGAAGCGTTCGAAGTTCCGGAAGTTCTTGAACACCTTCTGCATCGACGGAAACTACTTCCCAGCCATTCGTCTCATCCTCCCTAACCTCGATCGCGAACGAGGCTCCTATGGCCTCAAGGAGTCCGTCCTCGCCANTTCCCTCATCGACGCTCTCGGAATGTCGAAAGACTCCCCCGACGCACTTCGCCTAATCAATTGGCGCAAAGGTGGCGCTAAAACCGGCGCAAATGCCGGTNATTTCGCCCTTGTCGCCGCCGAGGTGCTGCAGCTTAGGCAAGGGACGGCTTCGGGTGGGTTGACGATAAAGGAGTTGAATGACTTGCTTGATCAGTTGTCTTCGAGTGAAAACAGGGCTGAGAAGACTTTGGTTCTTTCTACCCTTATCCAAAAGACAAATGCACAGGAAATGAAGTGGATTATCATGATAATCCTGAAAGATCTGAAGCTGGGAATCAGTGAAAAAAGCGTTTTTCATGAATTCCATCCAGATGCTGAAGACTTGTTTAATGTTACATGTGACTTAAAATTAGTTTGTGAAAAGCTAAGGGATCGGAATCAACGTCATAAGCGGCAGGATATTGAAGTTGGAAAAGCTGTGCGCCCACAATTAGCCAAGAGAGTTGCTAATGCAGCTGAGGCATGGAAGAAGCTTCATGGGAAGGAAGTGGTTGCTGAGTGCAAATTTGATGGTGATCGAATTCAAATTCATAAAAATGGAACAGAAATACATTTCTTCTCAAGGAACTTTCTTGATCATTCTGAATATGCACATGCAATGTCNGAAATCATAATACAAAACATTCTTGTAGATAGGTGCATACTTGATGGTGAAATGTTGGTCTGGGACACCTCCTTGAATCATACTAGTGTAATTCACCAATCTTTGAAGGAACGACATGAAATTCTTCGTAAAGTTGTGAAGCCAATAAAGGGTCGTTTGGAAATTTTAGTACCTAATGGTGGTATCAACAGTCATCGTTCTTCTGGCGAACCATGTTGGTCATTCATTGCTCATAACGTGGATGAAGTTGAGAGAGATGAGGGAATTGTTGTAAAAGACCTCAACTCCAAATGGGAACCTAGTGATCGCAGTGGAAAGTGGTTAAAATTGAAGCCCGAATACATTCAAGCCGGCTCTGATCTGGATGTACTTATCATAGGTGGCTACTATGGCTCTGGGCGACGTGGAGNAGAGGTTGCTCAATTCTTGGTGGGCATTGCAGAGCGTCCATCCCCAAATTCACATCCCAAGCGATTTATATCCTTTTGCAGAGTTGGTACTGGACTTTCTGATGATGAGCTTGATACAGTAGTAACCAAACTAAAACCTTACTTCAGAAAGTATGAATATCCAAAGAAGAGGCCACCGAGTTTTTATCAAGTTACTAATCATTCCAAAGAAAGACCTGACGTGTGGGTTGATAGCCCTGAGAAATCAATTGTTCTGTCTATAACCAGTGATATCCGAACTATAGAATCTGAGGTATTTGCTGCACCTTATAGCCTGAGGTTTCCTCGGATTGACAGGGTGAGATACGACAAGGCGTGGTATGAATGCCTTGATGTGCAGTCATTTATAGAATTAGTGCATTCTAGCAATGGTACCACACAGAGGGATACAGAATATGGCAGCAAGCAGGACAACTTTGTTAATGTGCCTCCATCTCATTCCCTTGAGTCCTTGCACAAAATAATTGCAGAGAATGGGGGAACTTTCTCAATGAATTTGAATAACTCGGTCACCCATTGTGTTGCAGCAGATAACAAGGGGTTTAAATTCGAAGCAGCAAAACGTCATGGTGATATCATTCATTATACTTGGGTATTAGATTGCTATTCACAAAAGAAGCTCGTCCGCTTACAGCCGAAGTACTTCCTCTTCCTATCTGAACTAACAAAGAAGAAGTTGCAAGAAGAAATTGATGAGTTTTCAGACTCATACTACTTGGATCTAGATCTTGGAGACATCAAACAGCTCTTAAGCAATATTCATAGGTCAGAAGATGTNAGAACTGTCGATCATTACAGGAAAAAGTACTGCCCAAAGGATAAGTGGTCTTTCTTGAATGGATGCTCCATTTATTTCCACACAGCAATACCATCAATGAAAGAAGATTGGCAATTTCTATTGAGACTTTCCTTGAGGAGATTCAAGGTTGAAGTTCTCATGGGAGGNGGAAAAGTTACCTCCAATCTCAATTGTGCAACTCATTTAGTGGCCTTGTTTGTGCCAAGTTATCATACCAACTTTGAAGAAGAAATACAGAGTAGTTTCACTTCAGCAGAGAGAAAAATTCTCGGAAGCAAGAGGTTGCATATAGTTAAATCCCAGTGGTTAGAAGATTGTTTGAACAGTAGCCAAAGATTATCAGAAGACGCTTATAGCTTGAAGCTCTGTGGAATAGAAGATGAACATGATGACTTGGGGTCAGAGTTGCATCTTGTTGGAGATAATGTAGAAGACCAAAATATATCTTTCTCTGAGAAGCTAAGTGAACAGAGTAGTGCAAAAGCTGCTCACGAAGACAGTTTGGCTTTGGTGTCCCAAGTGAAAGGTGGNGAAAGGAAAAGAGGAAGACCTGCAGGCAGAGGTATAAAAAAAGTGAACACAGCTGGCAACCAAGCTAGAAGGGCACGAGCACAAATTGTGAAAANGCGTGCAAAATTAAGTGAATATGAGTCACCAGATGAAAGTGATTCTCGTGATGAAAAAAGACCACATGAGCAAGAGACTGACACTGGAGAAGGGAATCTTGAGTTTCACAAGAAACATTCAGAACCACAGGAGGAGACTGAGAAAGGTGAAAATGTCCAAGGAACTGAAACAGTAGNAAGTTCTGAACAAAACATGAAAGAAGAACATGAAACAATGTTGGTTCCCGAAATTGAAATGAAGGATGGGCACAATGACGACAAAAACACACAGGTGGTGACTGAGAAACANGAAATTATGGCTGATGATCCTGTGCAGGCCATGTTACTTGACATGATTCCTAGCCTTGCCACAAACAAAGTGGAGCAACAACAACCCATGAATCGTTATTATGTTGCAGAAGAGAAGGCANCAGAAGTCTCCAACTCAGAGCAGCCTCCAACTACAAAGAAAAAGAAAGTTAGCTACAAGGATGTTGCTGGGGAGCTGCTCAAGGATTGGTAGAGCATCGTCTTGCAGATGGATTAATATTAAGTTATGAATATATGGCCCAGAAGTTCCTTTTCAAACTAGTTATTCAAAATCTTAAATCAGGTATCCTCCATCTTGGAGGCAATCCTGTTCGAGGTGCGGTGAGGCAATAAATGTGGGCACCTCTCCCAACGGAGATTGGAACTGTTGTTCACTGCGTTATGGGGGACTAGCCCCTTTTGCTAGATCCAAACACTTAAGGCACTAGTGCCGCAATGGCACCGTGGTGGGATAGCGCCGCAATGTCACGCTATTTCGGTTGCAAAAGTGGTTGCGTCGCGACACTAAAACGTTCCATAACAGCTCCTCCATAGCGGCCAAGCTGCTTTGCTCCACGACGGCGCTA

Protein Sequence

>Glyur001426s00029333.1
MTEQTKFSVLCSLFTWTQRSKSPAKKRSKFRKFLNTFCIDGNYFPAIRLILPNLDRERGSYGLKESVLAXSLIDALGMSKDSPDALRLINWRKGGAKTGANAGXFALVAAEVLQLRQGTASGGLTIKELNDLLDQLSSSENRAEKTLVLSTLIQKTNAQEMKWIIMIILKDLKLGISEKSVFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRVANAAEAWKKLHGKEVVAECKFDGDRIQIHKNGTEIHFFSRNFLDHSEYAHAMSEIIIQNILVDRCILDGEMLVWDTSLNHTSVIHQSLKERHEILRKVVKPIKGRLEILVPNGGINSHRSSGEPCWSFIAHNVDEVERDEGIVVKDLNSKWEPSDRSGKWLKLKPEYIQAGSDLDVLIIGGYYGSGRRGXEVAQFLVGIAERPSPNSHPKRFISFCRVGTGLSDDELDTVVTKLKPYFRKYEYPKKRPPSFYQVTNHSKERPDVWVDSPEKSIVLSITSDIRTIESEVFAAPYSLRFPRIDRVRYDKAWYECLDVQSFIELVHSSNGTTQRDTEYGSKQDNFVNVPPSHSLESLHKIIAENGGTFSMNLNNSVTHCVAADNKGFKFEAAKRHGDIIHYTWVLDCYSQKKLVRLQPKYFLFLSELTKKKLQEEIDEFSDSYYLDLDLGDIKQLLSNIHRSEDVRTVDHYRKKYCPKDKWSFLNGCSIYFHTAIPSMKEDWQFLLRLSLRRFKVEVLMGGGKVTSNLNCATHLVALFVPSYHTNFEEEIQSSFTSAERKILGSKRLHIVKSQWLEDCLNSSQRLSEDAYSLKLCGIEDEHDDLGSELHLVGDNVEDQNISFSEKLSEQSSAKAAHEDSLALVSQVKGGERKRGRPAGRGIKKVNTAGNQARRARAQIVKXRAKLSEYESPDESDSRDEKRPHEQETDTGEGNLEFHKKHSEPQEETEKGENVQGTETVXSSEQNMKEEHETMLVPEIEMKDGHNDDKNTQVVTEKXEIMADDPVQAMLLDMIPSLATNKVEQQQPMNRYYVAEEKAXEVSNSEQPPTTKKKKVSYKDVAGELLKDW

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01426	39452	62081	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K10777	LIG4, DNL4	EC:6.5.1.1	Non-homologous end-joining	map03450
			Non-homologous end-joining	map03450

Gene Ontology

biological_process

GO:0006281 DNA repair

GO:0006310 DNA recombination

GO:0051103 DNA ligation involved in DNA repair

molecular_function

GO:0003677 DNA binding

GO:0003909 DNA ligase activity

GO:0003910 DNA ligase (ATP) activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001426s00029333.1	PF04675.9	DNA_ligase_A_N	6	187	2.60E-38
Glyur001426s00029333.1	PF01068.16	DNA_ligase_A_M	226	311	3.00E-17
Glyur001426s00029333.1	PF04679.10	DNA_ligase_A_C	421	539	2.00E-13
Glyur001426s00029333.1	PF12738.2	PTCB-BRCT	581	625	3.30E-08
Glyur001426s00029333.2	PF04675.9	DNA_ligase_A_N	6	187	2.50E-38
Glyur001426s00029333.2	PF01068.16	DNA_ligase_A_M	226	311	2.90E-17
Glyur001426s00029333.2	PF04679.10	DNA_ligase_A_C	421	539	1.90E-13
Glyur001426s00029333.2	PF12738.2	PTCB-BRCT	581	625	3.10E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.972
SRR1783600	control	7.049
SRR1783602	moderate drought stress	7.777
SRR1811619	moderate drought stress	7.691

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.906
DRR006520	Root Summer glycyrrhizin high producing strain	4.825
DRR006521	Root Winter glycyrrhizin high producing strain	11.765
DRR006522	Root Winter glycyrrhizin high producing strain	11.314
DRR006523	Root Summer glycyrrhizin low producing strain	4.495
DRR006524	Root Summer glycyrrhizin low producing strain	4.477
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.640
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.937

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.922
SRR2868004	Drought Stress (root)	16.229
SRR2967015	Control (root)	15.870

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.509
SRR9715740	Leaf	3.586
SRR9715741	Leaf	8.181
SRR9715739	Root	0.395
SRR9715742	Root	3.113
SRR9715743	Root	2.073

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	24.578
SRR8749028	MeJA induced 9h	24.316
SRR8749029	MeJA induced 9h	24.285
SRR8749030	Uninduced	23.385
SRR8749031	Uninduced	19.957
SRR8749032	Uninduced	22.050

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.371
SRR8400027	Control - Root	12.473