Gene detail

Gene detail information of Glyur001426s00029330

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G17680.1	2.00E-31	disease resistance protein (TIR-NBS-LRR class), putative
NR	XP_003617379.1	0	CCP [Medicago truncatula]
COG	YP_007098491.1	7.00E-06	Leucine Rich Repeat (LRR)-containing protein [Chamaesiphon minutus PCC 6605]
Swissprot	tr\|O23530\|SNC1_ARATH	3.00E-27	Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1
trEMBL	tr\|G7K3B3\|G7K3B3_MEDTR	0	Disease resistance protein (TIR-NBS-LRR class) {ECO:0000313\|EMBL:AET00338.1}

Sequence

Transcript Sequence

>Glyur001426s00029330.1
TCTGAAGAAACCGATGAGATTAAAAAGATTGTTGACAAGGTCAAAGCTAACATAGCTCCTAAACCTTTACATGTTGGTGAGGACCCAGTTGGACTTGAGCACCGCACGGAAGAGGTGAAGTCACTTCTAGACATGAAGCCTAATGACGATACTGTATGCATGTTGGGCATATGTGGACTTGGTGGAATAGGGAAAACAGAACTTGCCAAGGCAGTGTATAACAAGATCGTAGGCCAATTTTTGGCTGCAAGTTTTCTTGCCAATGTTAGAGAGAAGTCAAATAAAATCAATGGCCTAGAAGATCTACAGAAGACACTTCTTTCAGAGATGTTTGAAGGGCCAGACTGCATGTTGGGCAGTACAAATAGAGGAATGGAAGAAATAAAACACAGGCTTCGCGACAGAAAGGTTCTTTTGGTTCTTGATGATGTTGATAACATCGAGCAGTTAAAAAACTTGGCAGGAGGATGCGATTGGTTTGGTCCAGGGATAATGCTCGATCCTCCCGAACGTATAGAAGTAGATTGGAGTGGTATTGCCTTTAAGNNGATGAACTGCCTCAGAATTCTCATTGTTCGAAATACATCCTTTACATCAGAGCCTGCACACCTACCAAATTATTTAAGGTTGCTTGATTGGGTGGAGTACCCTTCAAAGTCTTTCCCTCCAAAATTTCATCCGAGGAATATCATCGTCTTTAATTTGACTAAAAGCCAACTTACACTGGAAGAGCCATTTAAGAAATATTCATGCCTGACTGTCATGAATTTCTCACATAATCAATATATCACAGCAATGCCTGATGTGTCTAAAGTTCAAAGATTGAGAGAACTAAGACTTGATAATTGTAAGAACCTAATTGCAGTTCATGAATCCGTTGGATTTCTGGAACATCTTGCCCACTTAAGTGTTTCAAGATGCACCAAACTTAGAAATTTCTTGCAAAGAATGTCTTTACCGTCTCTGGAAGTCCTCGACCTTGATTTTTGCGTAAAACTTGAACACTTCCCAGAGATAGTGAACAACACGAACATGTCATTGAAGATTTCTATGATACAAACCGCTATTGAGGAGATTCCAGATTCCATTGGTAATCTTACCGGGCTTGATTCTATAGAGATGCAAGGTTGCATGAAACTCAAATATCTACCAAGTAGCTTATTCAAGTTACCAAAAGTTGTTGCCTTGAAAATTGAAGGATGCTCTCAACTTCGAGAATCCTTCAGAAGGTTCCTACATGATGTCCCTTCAGCAACCAGTGGCCGTTCAATACTAAAAACATTATACTTCGGAAATAGTGGTTTGCAAGATGAAGATCTACAGGCAATTCTCATTTGTTTTCCAAAATTAGAAGAGTTGATTGCATCGAAGAACAATTTCGTCTCTCTCCCTGCATGCATTAAAGATTCTGTTCACTTGATAAGTCTTGATGTGAGTGATTGCCAAGAGCTTCAAGACATTCCTGAATGCACTAACGTGAGAATTCTGAATGTCCATCGTTGTGTGAGGCTTGAATACATTTCAGAGTTGCCCTCTACTGTTCGGAAAGTAGATGCAAGATACTGCTCCTCCTTGAGTAGAGAGGCGTCAGACATGCTATGGTGTCAGGTGAAAAAAGACATACGCGGATTAGAAATTGTGATGCCCCAAAACGAGATTCCAGAGTGGTATGACTACAGAGGTGAAGGAGGGAATCCACGTTTCTGGGCTCGTGAGAAGTTCCCCAATATTGCTTTAGCACTGGTGTTGGCGAGTGTGAATGGAAGGGAGAGACCATCTCGCCGGCTACTTGTTGAGCTTCACTTGGTTATCAACGGTCGATGTGTCCCTCGCAAAGGCTATTACAACTTCAGAGTTGAAGCAGATCATGTCTTAGTCTGTGATCTGCGACTCTTGTTCAGCGAAGAGGAGTGGCGGGGTCTTGATGCACTGCTTGATCAGCAGGAGTGGAATCTAGTGCAGGTTTCATACGAAGCCCCATCTACCATAATGCTAAGTTGTTGGGGAGTATTTGTGTACAAACAAGGAACAACAAACATGGGAGAATATGTCCAATTCATGTGTCCCGACCCAAAATGCTCGGATATAGCCAACATACCCACAATAGTCCCTGCAAGAGATCCTAAGTGGGATCAAAGGAAGATGATAGAGGAGTTAGCTCTAGATAAAATATTTGATGGGACGTTGAGGGAATCCATGGACTTCGAAGAGCGAGATCACTTTGCAAGCTATGCAGATAAAGATTTTGCACAAGAGCAACACTATTTTCTAATGAAAAGGTTGAATTCGATATCAAAGCAGGCTAAAGATGTATTAGATGGCAAAGCGATAGATGATAAGAACTCCACTCTTCCAGGGTTGCTGGAGGTTATGAACAAACACAATGATAAGAACACTGAGCCTATTGTGTNCTATAAGGATCTCGCATTGATACGACTCGGGGATGAATTTAAACTAGAAGAAGATTCAACCTCAGGCCAACGCTATGTTCAATTGGGGCATAAGAAAGGGACGATATCGGAGGAGGCTCAGGATGTAGTACAAGGCAGCGATCCAGAGCAGGAAAAAGTAATGGAGGAGATATTCTTGGAAGGAATGGGGGAAGGACTTCGTGAAGCACAGAGAAGCTTTCCTTCCCTAGATATAGACACAACCATGGCGACCGCCTTAGACAAAGGTAACAACAGGGTTAGATGGTCACAACCAGTTGGAAACCAAGTTGAAATGAAATACATGGAAGGGATTATCAATGGACTGATGGAAGCAAAGCTGAGCTTTCCCACTCTGGACATAGAGGCAACACTGAAAACCATCATGTCAAGTAGGGGGGGCCATGAAGGACCANGGATTCAAATTAAGCTAGAAGAAGCTTCAACCTCCGGCAATCAGGGAAGTTCAACGGTACAAGGCAGCGATCCTCAGCAGCAAGAAAGACTGATGGAAATATTNTCGGAAGGAATGGGGGAAGGACTTTGTGAAGCACAGAGAAGCTTTCCTTCCCTAGACATAGACATAACCATGGCTACNGCCTTAGACAAATGTGATCGGTTTAGAAATAGATGGCCACAACGACCAGAAATGGAGATATACACGGAAGGAATTGTCAATGGACTGCAGGAAGCAAAGCTAAGCTTCCCCACTCTGGACGTAGAGGCAACAACAAATACGGTGCTAAGTAAGGGGCCCTACAAAGGACCTAACGGAGCACCACCCACGTTTCGGTTATTGAAATTGGATTTGGATTGGACTAAGGTGAAGGTCCCTGGCAATGAGGATGATCCTTTATTGGAATCATCCGTGATGATGAAGCAAGATAACTGTGAGTCGGAGGACAAGAGTAAACTCTACTACTGCCAGTTGATGGAGGAACACAAAGCTCTGCGCAAGAAACTTGAAGAACTTGAAAATAAANATAGTTGTCTTCTTCCTTCTTCCGGGAAAAATCAATATGATGAATTGATGGAGAAGCTCAACAGTCCTCAATCTGCTCTGTCTATTTCAAAGAGTTGTCACAACCTTGATGGTGCTGCTTCGAGTAGTAGTAGCACAGAGATGTACACAGACATTGGGAAAGAAGGTTGTAGAGGTGCTACACAATATGAGAAGTTGGCTGCTGTTTTGAAAGGAAGGGATGAAGAATTGCAGAGGCTCCATGATGCTGGAATTGAAGGCTTCCAGAATACAGGAGATATTCAAGGTCTGATGAATACCATATACTTGAAGGGACTGATGGATGGACACCTTGAAGCACGGATGGTGTTACTTGCCCTGGACATGGACGACAAAAGAACAGCTTCAGTGATTAATGAGAATGAGGAACATGTTACTCATCATGAGGCTGCCAGAGATGAACATGTCGCTGCTGAGGCTGCTGATAATGAAGATCCTGATAAAACAATTGGCGTAGTGGCAGATATTCCAAGTTCTACTACTGATTCGGAAGTTGACAACCCTCGGGACACTTCTACCCCCTCCGCCTCACAGCTTCTGGAGGAATTTGGTCACTTGTTTTTTTAGGAGAGATTCTTAGTTCTACCAGTAATAAAATGGTGCACTTAAATTGCACTGACCACTGACTGGGTTTCACAATAATTATGCATGTGTTAAATGATGTGTTTTAGGACTGTTGACGTGGAGTCAAATGTTTTTAAGTTGTTCCTTTTTATTTTGTGTTGGTTATTTTTTTTTCTATTCTTGTTTGCTGTTCAGTTTATGATCGTGGCTAGACCATGACTCTAGTAGGTGGTGTCGTGGTGGTTATTAGGCTTTAGAGTTTTTTAAAGTTCAGAAGTTGTAATGTCTTTATTTTAGGCGTGACAGCAGTTTGGTCAACTTATGTTGCCTTTTACCAAGCAAATCTCTGTTTTCTTTCTGGTTCAATTAACAACAGCATAGGACACTTTTGTTTTCTATTTAATCACTCTATTTAGTTCTTTTCAGTACTAACAGTTGTTAGTGTCTGTACATGGTAAAGACAATGTTGACATGGACACAACAACTCCAGTGATTAAGGAGAATGAGGAACATGTTACTGGTAACGAGGCTGTTACTGCTCCTGAGACTGCTCCTTATGAAAATCCTGATGAAACAATGGCCGTAGTACCCCACGGAATTTGGTCACCGTGTTTAAGTGATATTTAGTTGTACCAGGTATAAAATGGTGATGCTTTAGTATGAAAAAAAAGGAATAAAATGATGCACTTTAAATTTCAGTGACTAGTGATGACTACTGCGTCATGCATACGACACTATTGCTTTCTACTTTGATCGCCCCATCTAGTCCTTTACGATACTAATAATTATTGGTGTCTCTGTAAAAAATACCCAGTTGTGGAAAAGGCTTGCACGCTTCACACTAAGGGTGCGGAATGTTTCTTGGTTGTGAACATTTCTGGAGTATCACCTCTAAATATCTAATGGCAAATGAAACGAGACAGTAGCTTTCACACCTGGAGTGGGAAATAATCCCCAGGTGTGATCAACTCTGGAGCGCCGTTGTTGGAGGCAATGGAAAGGGCACTCACTTATCACATAGGGGGGTGTGAAGTAATTCGCAGCTGTGAACAAATCTGGAGCAACAATTCTTAAGGCAATGACTAAGAATCAGAACGTTTCACAACCAGTGCGTGAAAATCTCCCCAGGTGCGATCAATCTGGAACACCAACACTGAAGTAAAAGGGATCGTCCCTGACAGTTTCACACTTGGGATGTGAAATACATCCCAGGTGTGATCTGTGCGTTATGGAGGGGTTCTACTGCAATATGTTTCACGCATGTAGTGTGACAAATTCTCCACTTGTGACCAGTTCTGGTATGAAGGGGAATCTTCTATCTTTTTGTTACCAAGGCAGGGGGATGGGGTCGTAGTATATAGCCCCTTATATTTTCACGTTTTCGGTAATATAGGCATTTAGTTTTCTTTGTCATTTTCATATGTATAGTAGAATATTTTGGACTGGTTTGTCTTGGTTAGC

Protein Sequence

>Glyur001426s00029330.1
SEETDEIKKIVDKVKANIAPKPLHVGEDPVGLEHRTEEVKSLLDMKPNDDTVCMLGICGLGGIGKTELAKAVYNKIVGQFLAASFLANVREKSNKINGLEDLQKTLLSEMFEGPDCMLGSTNRGMEEIKHRLRDRKVLLVLDDVDNIEQLKNLAGGCDWFGPGIMLDPPERIEVDWSGIAFKXMNCLRILIVRNTSFTSEPAHLPNYLRLLDWVEYPSKSFPPKFHPRNIIVFNLTKSQLTLEEPFKKYSCLTVMNFSHNQYITAMPDVSKVQRLRELRLDNCKNLIAVHESVGFLEHLAHLSVSRCTKLRNFLQRMSLPSLEVLDLDFCVKLEHFPEIVNNTNMSLKISMIQTAIEEIPDSIGNLTGLDSIEMQGCMKLKYLPSSLFKLPKVVALKIEGCSQLRESFRRFLHDVPSATSGRSILKTLYFGNSGLQDEDLQAILICFPKLEELIASKNNFVSLPACIKDSVHLISLDVSDCQELQDIPECTNVRILNVHRCVRLEYISELPSTVRKVDARYCSSLSREASDMLWCQVKKDIRGLEIVMPQNEIPEWYDYRGEGGNPRFWAREKFPNIALALVLASVNGRERPSRRLLVELHLVINGRCVPRKGYYNFRVEADHVLVCDLRLLFSEEEWRGLDALLDQQEWNLVQVSYEAPSTIMLSCWGVFVYKQGTTNMGEYVQFMCPDPKCSDIANIPTIVPARDPKWDQRKMIEELALDKIFDGTLRESMDFEERDHFASYADKDFAQEQHYFLMKRLNSISKQAKDVLDGKAIDDKNSTLPGLLEVMNKHNDKNTEPIVXYKDLALIRLGDEFKLEEDSTSGQRYVQLGHKKGTISEEAQDVVQGSDPEQEKVMEEIFLEGMGEGLREAQRSFPSLDIDTTMATALDKGNNRVRWSQPVGNQVEMKYMEGIINGLMEAKLSFPTLDIEATLKTIMSSRGGHEGPXIQIKLEEASTSGNQGSSTVQGSDPQQQERLMEIXSEGMGEGLCEAQRSFPSLDIDITMATALDKCDRFRNRWPQRPEMEIYTEGIVNGLQEAKLSFPTLDVEATTNTVLSKGPYKGPNGAPPTFRLLKLDLDWTKVKVPGNEDDPLLESSVMMKQDNCESEDKSKLYYCQLMEEHKALRKKLEELENKXSCLLPSSGKNQYDELMEKLNSPQSALSISKSCHNLDGAASSSSSTEMYTDIGKEGCRGATQYEKLAAVLKGRDEELQRLHDAGIEGFQNTGDIQGLMNTIYLKGLMDGHLEARMVLLALDMDDKRTASVINENEEHVTHHEAARDEHVAAEAADNEDPDKTIGVVADIPSSTTDSEVDNPRDTSTPSASQLLEEFGHLFF

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01426	8813	15841	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001426s00029330.1	PF00931.17	NB-ARC	37	153	1.20E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.746
SRR1783600	control	1.733
SRR1783602	moderate drought stress	1.071
SRR1811619	moderate drought stress	1.020

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.618
DRR006520	Root Summer glycyrrhizin high producing strain	0.552
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.039
DRR006523	Root Summer glycyrrhizin low producing strain	11.378
DRR006524	Root Summer glycyrrhizin low producing strain	11.666
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.042
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.017

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.009
SRR2868004	Drought Stress (root)	3.165
SRR2967015	Control (root)	3.882

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.041
SRR9715740	Leaf	0.069
SRR9715741	Leaf	0.023
SRR9715739	Root	0.417
SRR9715742	Root	1.648
SRR9715743	Root	1.365

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.640
SRR8749028	MeJA induced 9h	0.694
SRR8749029	MeJA induced 9h	1.201
SRR8749030	Uninduced	0.640
SRR8749031	Uninduced	0.457
SRR8749032	Uninduced	0.423

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.719
SRR8400027	Control - Root	0.895