Gene detail

Gene detail information of Glyur001425s00026828

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G57880.1	0	Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein
NR	KEH30271.1	0	C2 calcium/lipid-binding and GRAM domain protein [Medicago truncatula]
Swissprot	tr\|Q9ZVT9\|C2GR1_ARATH	3.00E-12	C2 and GRAM domain-containing protein At1g03370
trEMBL	tr\|A0A072ULK6\|A0A072ULK6_MEDTR	0	C2 calcium/lipid-binding and GRAM domain protein {ECO:0000313\|EMBL:KEH30271.1}

Sequence

Transcript Sequence

>Glyur001425s00026828.1
ATGCAGAAGCCACCACATTCTCATGAGTTTGCTCTTAAGGAGACCTCACCCAACATTGGAGCAGGGGCAGTCACAGGGGACAAGCTATCCTGCACCTATGACCTGGTTGAACAGATGCAATACCTCTATGTTCGTGTTGTCAAAGCCAAGGATTTACCTTCAAAAGATCTCACTGGTAGTCTTGATCCCTATGTTGAAGTGAAGCTTGGAAACTACAAGGGACTTACCAAGCATTTTGAGAAGAAGTCCAATCCTGAGTGGAATCAGGTCTTTGCCTTCTCCAAGGACCGGATTCAGGCTTCAGTTTTGGAGGTGATTGTGAAAGACAAGGATGTTATAGCAGATGACTTTGTGGGGAGGGTGTGGTTCGATCTGAACGAGATCCCGAAACGTGTACCCCCAGATAGCCCATTGGCTCCACAGTGGTATAGGCTGGAAGATCGCAANGGTGAGAAAGCCAAGGGAGAGCTAATGCTGGCAGTTTGGATGGGAACTCAAGCAGATGAGGCATTTCCTGATTCTTGGCATTCTGATGCNGCAATCGTTGGCTCTGAAGCAGTCGCAAGCATAAGATCAAANGTTTACCTCTCTCCCAAGCTTTGGTATGTCAGGGTCAATGTAATCGAGGCTCAGGACTTGGTACCGAGTGATAAAAGTCGGTATCCTGAAGTATTTGTGAAGGTTGCTCTNGGGAATCAGCTTCTGAGAACTAGGATATCTCAAAGCAAGACCATAAACCCTATGTGGAATGAGGACTTGATTTTTGTTGCAGCCGAACCGTTTGAGGAGCCATTACTTCTGACTGTGGAAGACAGGGTTGGACCAAACAAAGATGAAATCCTGGGAAGGTGTGTGATTCCTTTGCAGATGGTGCAAAGGAGGTTAGATCATAAGCCTGTCAACACCAGGTGGTATAACCTTGAGAAGCATATGGTTGGTGAAGGGGAAAAGAAGGACACCAAATTTGCAAGCAGGATGCATTTGAGGGTCTGCTTGGATGGAGGGTACCATGTGTTGGATGAATCAACTCATCACAGTAGCGATCTTAGGCCGACTGCCAAGCAGCTATGGAAGCCTGCCATTGGGATTCTAGAAGTGGGGATTATCAGTGCACAAGGGCTGATGCCAATGAAGACAAGAGATGGTCGAGGAACCACAGATNCTTACTGTGTAGCTAAATATGGGCAGAAGTGGATCCGTACTAGGACGATCGTAGATAGCTTTAGTCCAAAGTGGAATGAGCAGTACACTTGGGAAGTGTTTGATCCTTCTACTGTTATTACAGTTGGTGTCTTTGATAATAGTCACATACAAGGAGGAGACAAATCCGGTGGATCGAAGGATGCTAAGATAGGGAAGGTGAGAATTAGGCTATCCACTCTTGAAACTGACAGGGTTTACACACACTCATATCCTCTTTTAGTACTGCATACATCGGGTGTGAAGAAAACTGGAGAAGTGCAATTGGCTGTTAGGTTCACAAGCTCATCTCTCATTAATATGTTGTACACGTATTCCCAGCCATTGTTGCCAAAGATGCACTACATCCACCCTTTATCTGTGATTCAGCTAGACCATCTGAGGCATCAGGCCACNCAGATTGTATCGATGAGGTTGAGCCGAGCTGAGCCACCACTTAGGAAGGAGGTTGTGGAATACATGCTTGATGTTGATTCACACATGTGGAGTATGAGAAGGAGCAAAGCTAATTTCTTCAGAATAATGAAAGTCTTTGGTGGTATGATAGCATTTGGGAGGTGGTTTGATCAGATCTGCAATTGGAAGAACCCAATCACATCCATACTAATTCACATCCTTTTCATAATACTGGTTCTTTACCCTGAGCTAATACTTCCCACAATTTTCTTGTACCTGTTCCTCATTGGAATTTGGAACTTCCGGTGGAGGCCGAGGCACCCTCCNCATATGGACACTCGGCTGTCTCATGCCGATGCTGCTTACCCCGATGAATTGGATGAAGAGTTCGATACATTCCCAACTTCCCGGCCATCGGATATTGTGAGGATGAGATATGATCGTTTGAGAAGCATTGGAGGGAGAGTGCAAACTGTTGTTGGTGACATGGCAACTCAAGGGGAAAGGTTCCAAAGTCTGCTAAGCTGGAGAGATCCAAGGGCTACCACTCTCTTTGTCATATTCTGTTTCATTGCTGCTATAGTTCTTTATGTTACTCCCTTTCAGGTTGTGTCTCTAATCATTGGCTTCTATGTGCTGAGGCACCCAAGGTTCCGCCAGAAACTTCCATCAGTCCCACTCAACTTCTTTAGGAGGCTGCCTGCTAGATCAGACAGCATGTTGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01425	67531	69852	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001425s00026828.1	PF00168.25	C2	42	121	2.80E-19
Glyur001425s00026828.1	PF00168.25	C2	204	284	3.60E-14
Glyur001425s00026828.1	PF00168.25	C2	364	453	1.30E-15
Glyur001425s00026828.1	PF08372.5	PRT_C	618	773	7.70E-82

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.932
SRR1783600	control	2.862
SRR1783602	moderate drought stress	2.575
SRR1811619	moderate drought stress	2.583

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.051
DRR006520	Root Summer glycyrrhizin high producing strain	0.973
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.332
DRR006524	Root Summer glycyrrhizin low producing strain	0.328
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.554
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.278

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.714
SRR2868004	Drought Stress (root)	5.401
SRR2967015	Control (root)	5.380

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.410
SRR9715740	Leaf	0.003
SRR9715741	Leaf	0.084
SRR9715739	Root	3.746
SRR9715742	Root	1.708
SRR9715743	Root	2.038

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.632
SRR8749028	MeJA induced 9h	0.145
SRR8749029	MeJA induced 9h	0.360
SRR8749030	Uninduced	0.055
SRR8749031	Uninduced	0.099
SRR8749032	Uninduced	0.147

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.711
SRR8400027	Control - Root	10.680