Gene detail

Gene detail information of Glyur001425s00026826.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G17420.1	5.00E-28	lipoxygenase 3
NR	XP_003537949.1	2.63E-109	PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Glycine max]
Swissprot	tr\|O24370\|LOX21_SOLTU	2.00E-59	Linoleate 13S-lipoxygenase 2-1, chloroplastic (Precursor)
trEMBL	tr\|K7LPI4\|K7LPI4_SOYBN	1.00E-109	Lipoxygenase {ECO:0000256\|RuleBase:RU003975}

Sequence

Transcript Sequence

>Glyur001425s00026826.2
GTACGACACTGGAGAAGGNAACTATCAAGGGTTACGTCCACTTGACGCATCGATCAGCACAAGAGTTTAAGTATGAGGCTGAATTTGAAGTGTCAGATAGTTTTGGAGAGATTGGTGCCATTCTTATGGAAAATGAGCATCACAGGGAGATGTTTATCAGGGAAGTTGTTCTTGATGGCTTCCTCACTGGTCCCGTTAATTTTTCTTGCCAATCCTGGGTTCATTCCAAGTATGACAACCCTGATAAGAGGGTGTTTTTCTCCAACAAGTCATATTTGCCATCTGAAACACCAGAAGGATTGAGAAGGTTAAGAGAAGAGGAGCTGGTAACTTTACGGGGCAATGGGCAAAGGCGAACGCAAGAGCTTTGAGAGGATATATGATTACGATGTGTATAACGACCTTGGAGATCCAGACAGCAACCCCGAACTCCAGAGACCTGTTCTTGGTGGCACTCAACATCCATATCCTCGGCGATGCAGAACCGGAAGACCTCGCTGCGACTCAGTTCACGTTTTCGACAAATACATTACACTCGGGGTTGCACGCGCTCCTACCGGCACTGAGTACAGCGATAGTTGACAGAAACCTTGGGTTCCCTGTGTTCTCAGCCATAGATGACCTTTTCAATGAAGGGCTTAGCTTGCCTCCTCAACAGTCCAAAGGATTTCTCACGACCGTGTTGCCAAGGCTGGTCAAGCTTGTCAAAGATACCGAGGGTGACCTTCTCCGTTTCGAGACTCCCGCCACAATGGACAAGGACAGGTTCTTTTGGTTTAGGGATGAAGAATTTGGAAGGCAGACTGTAGCAGGTCTTAACCCGTGTTGCATCCAATTGGTCACGGAATGGCCATTGAAAAGCAAACTCGACCCTGATATTTATGGTCCTGCGGAATCAGCAATCACCACTGAAATAATTGAGCGAGAAATCAGAGGATTCACTACCGTGGAAGAGGCCATAAAGCAGAAGAAGCTGTTCATCCTGGACTACCACGATTTGTTGTTGCCATTAGTAGAGGAAGTCAGAAAACTTGAAGGGACAACACTNTATGGATCAAGGACATTGTTCTTCCTGACCCTCGATGGCACATTGAGGCCACTGGCTATTGAGCTAACTCGGCCACCTATGGATGGGAAGCCGCAGTGGAAGCAAGTCTTCACACCTTCCTGGCACTCAACCGGTGTTTGGCTTTGGAGGATTGCCAAAGCTCATGTCCTTGCCCACGACTCTGGTTACCACCAACTTGCTGAGAACNCATTGCTGCACAGAGCCTTATATCATAGCAACAAACAGGCAACTGAGTACACAATGGANATCAACGCCCTAGCTCGCGAAGCACTGATAAACGCAAACGGAATAATAGAGAGCAGTTTCAGTCCAGGGAAGCTCTCCATCCTTCTGAGTTCAATCATCTACGACAAACACTGGCAATTCAACTTGCAAGCCCTCCCAGCAGATCTCATTCACAGGGGAATAGCAGAGGAAGACCCATCTTCACCTCACGGCTTAAAGCTAGCCATAGAGGATTACCCTTACGCCAACGATGGCCTCGTTCTTTGGGACACCATNAAATCGTGGGTCACCGATTACGTGAACCACTATTACAAAGACCCAATTCTTGTTGAGTCAGATCAAGAACTCCAATCTTGGTGGGAAGAGATCAGAACCGTTGGTCACGGTGACAAAAAGGACGAACCTTGGTGGCCTAATTTGAAGACCCAAAAGGATCTAATTGAGATTGTGACAACCATCGTGTGGATTACATCAGGGCACCATGCGGCTGTGAATTTTGGGCAATATTCTTATGCTGGGTATTTCCCNAACAGGCCCACCATAGCGAGAAACAACATGCCCACAGAGGATCCTTCTGACCCAGAATGGGAACTGTTCTTGGATAAACCAGAGGTTACATTGCTCAAGTGTTTCCCGTCTCAGATTCAGGCCACGACCGTGATGACGGTGTTGGATATTCTGTCGAGTCATTCGCCTGATGAAGAGTATATTGGGCAAACCTTGGAGCCTTCGTGGGCAGAGGATCCGATTATTAATGCTGCGTTTGAGAAGTTTAAGGGGAAGTTGATGGAGCTTGAAGGGGTTATTGATGGGAGGAATGCGGATAGGACAAAGAGGAACAGAAACGGTGCTGGGATTTTGCCCTATGAGCTTCTGAAACCGACTTCGGATCAGCCTGGTGTCACGGGGAAGGGTGTTCCCTATAGCATCTCTATTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01425	48610	58181	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00454	LOX2S	EC:1.13.11.12	Linoleic acid metabolism	map00591
			Linoleic acid metabolism	map00591
			alpha-Linolenic acid metabolism	map00592
			alpha-Linolenic acid metabolism	map00592

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001425s00026826.2	PF00305.14	Lipoxygenase	44	294	1.00E-71
Glyur001425s00026826.2	PF00305.14	Lipoxygenase	308	600	2.60E-121

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.352
SRR1783600	control	0.344
SRR1783602	moderate drought stress	6.515
SRR1811619	moderate drought stress	6.443

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.050
DRR006520	Root Summer glycyrrhizin high producing strain	12.923
DRR006521	Root Winter glycyrrhizin high producing strain	0.174
DRR006522	Root Winter glycyrrhizin high producing strain	0.170
DRR006523	Root Summer glycyrrhizin low producing strain	0.377
DRR006524	Root Summer glycyrrhizin low producing strain	0.414
DRR006525	Leaf Summer glycyrrhizin high producing strain	531.677
DRR006526	Leaf Summer glycyrrhizin high producing strain	528.950

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.718
SRR2868004	Drought Stress (root)	1.155
SRR2967015	Control (root)	0.513

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1001.112
SRR9715740	Leaf	937.277
SRR9715741	Leaf	903.399
SRR9715739	Root	2.550
SRR9715742	Root	37.179
SRR9715743	Root	29.651

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.044
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.090
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.237
SRR8400027	Control - Root	0.623