Gene detail

Gene detail information of Glyur001425s00026823

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G45140.1	lipoxygenase 2
NR	XP_003539375.1	PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Glycine max]
Swissprot	tr\|O24370\|LOX21_SOLTU	Linoleate 13S-lipoxygenase 2-1, chloroplastic (Precursor)
trEMBL	tr\|I1LQG7\|I1LQG7_SOYBN	Lipoxygenase {ECO:0000256\|RuleBase:RU003975}

Sequence

Transcript Sequence

>Glyur001425s00026823.1
CAAACATAAAGACAGATATATATGATGAGAGCTAGTATAACACATATCAAATATAAGAGGGACATTGGTTATTTCGCATATTTTGGACCATAAAAACATAAAACGGAAGATTAGAAAGATGATAGAGCCTCAACTGTATCAATCACAGAGCACCAACCAAACACTCTTGTTTCTGCAGCGCCCATTCATCCATGGTATTGGTAGTGCTACGAGCAGTACTACTNCATCTCTTCCACTATGGTCGTCATGGAAGCTGCAACAGAGGCAAAAGGTTAAACGGCTCCTCCTCGTTAATCCTTGCAACGTTCAAGCTAACTCTACTACTTCTGCAACCACAACAGACACAGATAATAAAAAGACCACAGAGAAGAGCACAGTTAAGGTTAAAGCCGTAGTTAAGGTCAAAATAACTATGGCTGGTTTTTTCTCCAGTCTTAGGTTGGACCGAGGAATTGATGACATAACAGATTTGCTTGGTAAATCTCTCCTCCTGGAGCTTGTTAGCTCCGAGCTTGATCCTGAAACGGAAGCAGAGAAGGAGACGATTAAAGCATATGCCCACAAAGCAGGGCAAGGTGAGGAGTCGGTTAAGTACGAAGCCGATTTCGAAGTTCCAAATGATTTTGGGGAGATTGGTGCAGTTCTTGTTGAGAATGAGCATCACAAGGAGATGTTCCTTGAAACCATCCTCTTGGATGGCTTCTTCCCGGAGGGTCCTATTCATTTTGACTGTTACTCTTGGGTTCACTCCAAGTTCGATAGTCCCACCAAGAGGGTATTCTTCACCAACAATTGTTACTTACCATCAGAGACACCGAGTGGTTTAAGAAGACTAAGAGGAGAAGAATTGAGTAATCTGCGAGGCAATGGAGAAGGAGAACGCAAGAGCTTCGAAAGAATATATGATTACGATATTTACAATGACACTGGTGATCCTGATAAAAGCTTTGATCTTCAAAGACCCCCTTTAGGAGGCAAAGAACGACCTTATCCTAGACGTTGCCGAACTGGCCGTCCACATAGCGAAGCAGATCCAATGTCTGAAAGAAGAAGCAGAAAGTTTTACGTTCCAAGGGATGAGTGCTTCTCAGAGGTGAAGGAGCTAACATTCTCAACCAAGGCCTTACATTCAGTGTTGCTAATATTGCTTCCATCACTGGGGAAAATCATCAAAGAAAAGGAGCTTGCGTTTTCATACTTCCACGACATAGATTCGCTTTTCAGCACTGGACTTGACTTGCCCCCTGAGAGTGAAACGGAGAAGGGATTCCTAGGAACCATGATGCCCAGGCTGGTCAAATCCATTTCTGGCGATAGGGGACACGTGCTTCGCTTTGAGACCCCAGAGACAATGAGCAGGGACAGGTTTTTCTGGTTTAGGGATGAGGAATTTGCTAGACAAACTGTTGCTGGTCTCAACCCATGTAGCATTAAATTGGTCACAGAATGGCCATTCAGGAGTAAACTTGACCCAGCTATATATGGTCCAGCAGAATCAGCAATTACCTCAGAAATTATCAACAAGGAAATCGGAGGCATACTTTCTGCAGAACAGGCGATCGAAGAAAAGAAGCTGTTCATGCTAGANTACCATGACATACTATTACCGTATGTTAGCAAAGTAAGGAAACTGAAGGGGAAAACACTGTATGGGTCACGAACATTGTTCTTTCTAACACCAGAGGGGACACTGAGGCCTCTTGCCATTGAGCTGACTAGACCACCAATGGATGGAAAGGGCCAATGGAAGCAAGTTTACACGCCTTCTTGGCACTCTACCAGTGTTTGGCTCTGGAGGATCGCCAAGGCTCATGTTCTTGCACATGACTCTGGCTATCACCAACTTGTCAGTCATTGGTTAAGAACACACTGTGNGACAGAGCCCTATGTTATTGCGACTAACAGACAACTCAGTGTGATGCACCCCATATATAGATTGCTACACCCTCATTTTCGTTACACAATTGAGATAAATGCTCTGGCAAGGGAAGCTCTTATTAACGCTCATGGCACAATTGAGAGCTCATTCTCACCAGGAAAGGGAATGGCTGTGGAAGATCCANTTGCTCCACATGGGTTAAGGCTTACCATTCAAGACTATCCCTATGCCAATGATGGACTCCTTCTATGGGACACCATAAAGCTATGGGTCACTGACTATGTCAACCATTACTACCCTGAACCAAGTCTTGTGGGGTTAGATGAAGAGCTTCAGGCATGGTGGACAGAGATTAGAACATGTGGTCATGCTGACAAAAAGGATGAACCATGGTGGCCACATCTCAGAACCCCAAAAGACCTCATTGGAATCCTCAACACAATCATATGGGTAACTTCTGGTCACCATGCAGCTGTGAACTTTGGGCAATATGCTTATGGGGGTTATTTCCCAAACAGGCCCACAATTGCTAGAACTAAAATGCCCACAGAGGACCCATCAGAAGAAGAGTGGAAAAAATTCATCANAAAACCAGAAAGTGCACTTCTCAAGTGCTTTCCCTCACAGCTACAAGCAACTAGAGTCATGGCTGTGTTGGATATACTTTCAACTCATTCCCCAGATGAGGAATACATAGGGGAGAAGATGGAACCATCATGGGCTGAAGACCCTGTCATAAAGGCTGCATTTGAAAGGTTTAGAGAGAGACTGAAGAAACTAGAGCAACTGATTGATGAGAGGAATGAAAACACAAAGCTGAAGAACAGAAATGGAGCTGGCATTGTCCCATATGAGCTTTTGAAGCCTTTCTCGAAGCCAGGTGTGACTGGAATGGGGGTTCCCTGTAGTATATCTATTTGAATTGGCAGATTGATATCATGTTATAATGGGCCTCATATTACATGTTTCTGACACATTATCTAGTCTTAAATCAATGTTNATTTGCTTGATACTTGAATATACAACAAAATAGTAGATGGGTTTTAAAATTAAACATAAGATAGACACATAGTAACATACTAACATATATAGACTGAAGCCTCAACCAGAATTTTCATACATATATATATGACACATGTNACATGTTTCCTTATCCAAAATGTCAATGCTAAACCTCACT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01425	29308	36207	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00454	LOX2S	EC:1.13.11.12	Linoleic acid metabolism	map00591
			alpha-Linolenic acid metabolism	map00592

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005515 protein binding

GO:0016491 oxidoreductase activity

GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001425s00026823.1	PF01477.18	PLAT	140	222	2.70E-14
Glyur001425s00026823.1	PF00305.14	Lipoxygenase	234	642	5.70E-150
Glyur001425s00026823.1	PF00305.14	Lipoxygenase	641	876	9.10E-98

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.017
SRR1783600	control	2.014
SRR1783602	moderate drought stress	5.099
SRR1811619	moderate drought stress	5.067

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.619
DRR006520	Root Summer glycyrrhizin high producing strain	1.618
DRR006521	Root Winter glycyrrhizin high producing strain	0.109
DRR006522	Root Winter glycyrrhizin high producing strain	0.142
DRR006523	Root Summer glycyrrhizin low producing strain	0.490
DRR006524	Root Summer glycyrrhizin low producing strain	0.451
DRR006525	Leaf Summer glycyrrhizin high producing strain	213.276
DRR006526	Leaf Summer glycyrrhizin high producing strain	211.064

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.388
SRR2868004	Drought Stress (root)	0.387
SRR2967015	Control (root)	0.361

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	163.792
SRR9715740	Leaf	306.229
SRR9715741	Leaf	237.998
SRR9715739	Root	0.369
SRR9715742	Root	2.388
SRR9715743	Root	1.362

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.026
SRR8749030	Uninduced	0.062
SRR8749031	Uninduced	0.100
SRR8749032	Uninduced	0.065

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.004
SRR8400027	Control - Root	0.794