Gene detail

Gene detail information of Glyur001425s00026819.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G44480.2	1.00E-57	beta glucosidase 17
NR	KEH33228.1	1.15E-130	glycoside hydrolase family 1 protein [Medicago truncatula]
COG	YP_004449345.1	2.00E-38	beta-galactosidase [Haliscomenobacter hydrossis DSM 1100]
Swissprot	tr\|A3RF67\|BAGBG_DALNI	1.00E-80	Isoflavonoid 7-O-beta-apiosyl-glucoside beta-glycosidase {ECO:0000303\|PubMed:16098548} (Precursor)
trEMBL	tr\|A0A072UVY4\|A0A072UVY4_MEDTR	4.00E-131	Glycoside hydrolase family 1 protein {ECO:0000313\|EMBL:KEH33228.1}

Sequence

Transcript Sequence

>Glyur001425s00026819.2
AAAGAAATTAAGACAAAGAAAAGCAGAGTACAAACTCGATCAATATTATCAGACATAGGAATGGCGTGCAAGGGATTATACCTTGTAGGACTCCTCATTGCATTGGTTGTTAATTCGAATGTTGTGAATTGCGAAGAAACAGTTGGAGTTGCGCCCATTCTTGACGTTGCTTCGTTGAATCGTGGCAGTTTCCCTCCTGGCTTTATCTTTGGTGCCGGTTCCTCCTCCTACCAGTTCGAAGGTGCGGCAAGCGAAGGTGGCAGAGGACCAAGTGTTTGGGATACCTTCACCCATAAATATCCAGAAGGAAAGATTAGTGGTGGTATAAATCAAGAAGGAATCAATTATTACAACAACCTCATCAACGAGATGGTGGCTAATGGTGTACAACCATTTGTGACTCTTTTCCATTGGGATCTTCCCCAAGCTTTAGAAGATGAGTACGGTGGCTTCTTAAGCCCTCTCATAATGTTTATGGATCCACTAACATCAGGAGACTATCCCAAAAGCATGAGATCCCTCGTCGGAGCACGATTACCAAAGTTCACTACAAAGCAAGCNAGGCTACTCATTGGTTCATTTGATTTTATTGGTCTAAACTATTACTCCTCAACCTATGCCTCCGATGCACCTCATCTAAGCAATGCTAGACCTAGCTACTTGACAGATTCTTTGGTCGATGCTGCATTTGAGCGCAATGGGAAACCCATAGGCATTAAGATTGCTTCTGATTGGTTGTACGTTTATCCAAGAGGAATCCGTGACCTTCTGTTATACACCAAGGAAAAGTACAATAACCCAGCGATTTACATCACTGAAAATGGTATAAATGAATACGATGATCCAACACTGTCAGTCGAGGAATCCCTCATGGATACTTTTCGAATTGATTACCATTATCGGCATTTGTTTTATCTCCGATCTGCAATTAGGCATGGGGCGAATGTGAAAGGATATTACGTATGGTCTTTGTTCGACAATTTTGAGTGGTCCTCNGGATATACCGTGAGATTTGGAATGACCTTTGTGGATTACAAGAATGNCTTGAAAAGATACAAGAAACTTTCTGCACTATGGTTGAAGAATTTTCTAAAAAGAGAAACTAGACTTTATGTTTCTAGTGAGTAATTAATGTTGTGAGATTCATTCATTAAACAATTATTTTTGTAAATCATTTTTTTATTCTTTATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01425	7712	11175	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01188	E3.2.1.21	EC:3.2.1.21	Starch and sucrose metabolism	map00500
			Starch and sucrose metabolism	map00500
			Cyanoamino acid metabolism	map00460
			Cyanoamino acid metabolism	map00460
			Phenylpropanoid biosynthesis	map00940
			Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001425s00026819.2	PF00232.13	Glyco_hydro_1	81	134	3.10E-19
Glyur001425s00026819.2	PF00232.13	Glyco_hydro_1	137	347	8.10E-56

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.731
SRR1783600	control	0.734
SRR1783602	moderate drought stress	0.466
SRR1811619	moderate drought stress	0.432

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.020
DRR006520	Root Summer glycyrrhizin high producing strain	1.730
DRR006521	Root Winter glycyrrhizin high producing strain	0.225
DRR006522	Root Winter glycyrrhizin high producing strain	0.174
DRR006523	Root Summer glycyrrhizin low producing strain	12.869
DRR006524	Root Summer glycyrrhizin low producing strain	11.765
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.463
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.884

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	48.494
SRR2868004	Drought Stress (root)	272.286
SRR2967015	Control (root)	165.848

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	251.946
SRR9715740	Leaf	49.478
SRR9715741	Leaf	384.082
SRR9715739	Root	3.348
SRR9715742	Root	52.240
SRR9715743	Root	43.289

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.777
SRR8749028	MeJA induced 9h	33.918
SRR8749029	MeJA induced 9h	6.993
SRR8749030	Uninduced	826.587
SRR8749031	Uninduced	652.892
SRR8749032	Uninduced	146.797

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	39.571
SRR8400027	Control - Root	67.744