Gene detail

Gene detail information of Glyur001422s00031023

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G11880.1	3.00E-14	Pyridoxal-dependent decarboxylase family protein
NR	CAD91349.1	0	ornithine decarboxylase [Glycine max]
COG	YP_005433369.1	4.00E-71	lysine/ornithine decarboxylase [Selenomonas ruminantium subsp. lactilytica TAM6421]
Swissprot	tr\|P50134\|DCOR_DATST	0	Ornithine decarboxylase
trEMBL	tr\|Q70MR6\|Q70MR6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G02230.1}

Sequence

Transcript Sequence

>Glyur001422s00031023.1
ATGCCCACACTAGTTTCCGCCGAGCCAACAACCCAACCCATAAACCTCAAGTCCATTTTTGGCGCTTCAGGAGTAAAGGGCAAGNGAGTGACCACATTGTCCTCTGAAAAAGATGGCCTCTCTGATTTCATTCAGTCCATCACTAAGGACAAAACAGACATTGACATCGATGACGTGGACACACCATTCAGCGTTCTCGATTTGGGTGTCGTAACGGCCCTCTTTGAAAACTGGACCACCAAACTCCCCGGCGTTCAGCCTTATTACGCCGTTAAGTGCAACCCAAACCCNTCCATCATTGGAACACTGGCGGCGTTAGGGTCAAGCTTTGACTGCGCCAGCCGCAATGAGATTGAAACTGTTCTCTCCCTCGGTGTTTCACCCGACAGAATCATCTACGCCAACCCGTGCAAATCGGAGTCACACATCAGGTACGCCGCAAGTGTCGGTGTCAACGTGACAACCTACGACTCCGTCGAAGAAATCGAAAAGATCCGTAAGTGGCACCCACAATGCGAGCTTCTCCTCCGCATTAAGCCAGCGGGTGATAGCGGTGCACGCACGTGCCTNGGACTCAAATACGGTGCGCTTCAAGAAGAGGTCCCCGAGCTCCTACGTGCTGCCGACGTGGCGGGACTCAAGGTAACCGGCGTGTCGTTCCACATCGGAAGCGGAGGTGGTGACACGCGTGCGTATCACGGAGCCATCGCGATGGCTAAAGGGGTTTTCGAAACGGCGTCGCGTCTTGGCATGCCGAAAATGCATGTCCTCGACATTGGTGGCGGTTTCACTTCTGGCGCTCAATTTGATGCCGCTGCCGTTAAAGTTAACGCCGCGATTAAATCTCACTTCGGGGGCGAAGAGGATCTGGTTGTTATTGGCGAGCCTGGTCGTTACTTTGCGGAAACGGCGTTTACGTTGGTTACNAGGGTTATTGGGAAGCGCGTGAGGGGGGAGATGAGGGAGTACTGGATCGACGATGGGGTGTATGGAACTCTCAACTGCATTATGTTTGATTTCGCAACCGTCACGTGCACACCTCTCAGGTGTGCCTCAAAACCTGAGAACCCCACGTGCAGGGACAACAACAACAAGACTTACCCTTCCACTGTGTTCGGACCAACCTGTGATTCGTTGGACACGGTTCTTAGAGATTACCAGCTACCGGAGCTGCAGGTGAATGACTGGCTTGTGTTCCCAAACATGGGTGCTTATACCACGTCTTCTGGGACCAACTTCAATGGGTTTAGCTCATCGGCNAAGCACACCTACCTGGCATATTCCAGTCCTGTTGTTCAGTCCCAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01422	69845	71152	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01581	E4.1.1.17, ODC1, speC, speF	EC:4.1.1.17	Arginine and proline metabolism	map00330
			Glutathione metabolism	map00480

Gene Ontology

biological_process
GO:0006596 polyamine biosynthetic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001422s00031023.1	PF02784.11	Orn_Arg_deC_N	70	302	7.40E-68
Glyur001422s00031023.1	PF00278.17	Orn_DAP_Arg_deC	306	419	2.10E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	155.344
SRR1783600	control	143.731
SRR1783602	moderate drought stress	58.963
SRR1811619	moderate drought stress	53.115

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	77.538
DRR006520	Root Summer glycyrrhizin high producing strain	76.499
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	2.679
DRR006524	Root Summer glycyrrhizin low producing strain	2.926
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.071
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.071

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	481.012
SRR2868004	Drought Stress (root)	136.271
SRR2967015	Control (root)	141.601

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	44.383
SRR9715740	Leaf	0.832
SRR9715741	Leaf	9.918
SRR9715739	Root	1666.981
SRR9715742	Root	531.671
SRR9715743	Root	710.829

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.370
SRR8749028	MeJA induced 9h	0.152
SRR8749029	MeJA induced 9h	1.742
SRR8749030	Uninduced	0.452
SRR8749031	Uninduced	0.978
SRR8749032	Uninduced	10.365

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	407.899
SRR8400027	Control - Root	157.016