Gene detail information of Glyur001422s00031022 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G20340.1 | 7.00E-56 | Cupredoxin superfamily protein |
| NR | XP_004500905.1 | 3.72E-96 | PREDICTED: plastocyanin, chloroplastic-like [Cicer arietinum] |
| COG | YP_003886422.1 | 2.00E-25 | plastocyanin [Cyanothece sp. PCC 7822] |
| Swissprot | tr|P16002|PLAS_PEA | 4.00E-92 | Plastocyanin, chloroplastic (Precursor) |
| trEMBL | tr|B9R8G0|B9R8G0_RICCO | 1.00E-93 | Plastocyanin A, chloroplast, putative {ECO:0000313|EMBL:EEF52790.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01422 | 62635 | 63135 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001422s00031022.1 | PF00127.15 | Copper-bind | 69 | 166 | 3.30E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.497 |
| SRR1783600 | control | 0.460 |
| SRR1783602 | moderate drought stress | 0.917 |
| SRR1811619 | moderate drought stress | 1.101 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.203 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.379 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.750 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.316 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.888 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.985 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2351.388 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2327.478 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 95.163 |
| SRR2868004 | Drought Stress (root) | 73.592 |
| SRR2967015 | Control (root) | 38.483 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3168.488 |
| SRR9715740 | Leaf | 3138.297 |
| SRR9715741 | Leaf | 1990.302 |
| SRR9715739 | Root | 3.142 |
| SRR9715742 | Root | 10.778 |
| SRR9715743 | Root | 9.411 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 104.660 |
| SRR8749028 | MeJA induced 9h | 70.162 |
| SRR8749029 | MeJA induced 9h | 84.003 |
| SRR8749030 | Uninduced | 38.011 |
| SRR8749031 | Uninduced | 27.782 |
| SRR8749032 | Uninduced | 116.855 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 26.615 |
| SRR8400027 | Control - Root | 21.474 |