Gene detail information of Glyur001422s00031019 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G16990.2 | 1.00E-110 | Major facilitator superfamily protein |
| NR | XP_004500907.1 | 0 | PREDICTED: hippocampus abundant transcript-like protein 1-like isoform X2 [Cicer arietinum] |
| COG | YP_001370227.1 | 9.00E-23 | major facilitator superfamily transporter [Ochrobactrum anthropi ATCC 49188] |
| trEMBL | tr|G7J5X3|G7J5X3_MEDTR | 0 | MFS transporter {ECO:0000313|EMBL:AES74091.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01422 | 44605 | 52362 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001422s00031019.1 | PF07690.11 | MFS_1 | 13 | 386 | 6.20E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 28.356 |
| SRR1783600 | control | 28.383 |
| SRR1783602 | moderate drought stress | 18.646 |
| SRR1811619 | moderate drought stress | 18.730 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 24.281 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 23.882 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.405 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.552 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 50.992 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 51.351 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.557 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.517 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.580 |
| SRR2868004 | Drought Stress (root) | 8.025 |
| SRR2967015 | Control (root) | 11.122 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.821 |
| SRR9715740 | Leaf | 9.897 |
| SRR9715741 | Leaf | 3.782 |
| SRR9715739 | Root | 16.336 |
| SRR9715742 | Root | 26.021 |
| SRR9715743 | Root | 24.474 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.049 |
| SRR8749028 | MeJA induced 9h | 2.949 |
| SRR8749029 | MeJA induced 9h | 2.361 |
| SRR8749030 | Uninduced | 0.937 |
| SRR8749031 | Uninduced | 0.646 |
| SRR8749032 | Uninduced | 1.161 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.601 |
| SRR8400027 | Control - Root | 25.106 |